Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RPS3P2-201ENST00000421346 701 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 AC066692.1-201ENST00000421721 457 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXD4P09016 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXD4P09016 PPIAP10-201ENST00000438675 458 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXD4P09016 CFL1P4-201ENST00000451536 498 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXD4P09016 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXD4P09016 AC025458.1-201ENST00000506046 166 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXD4P09016 LDHAP1-201ENST00000509421 992 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 MTATP6P1-201ENST00000514057 681 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXD4P09016 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXD4P09016 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXD4P09016 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXD4P09016 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
HOXD4P09016 AC079905.1-201ENST00000549280 475 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXD4P09016 AC007494.1-201ENST00000562293 760 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXD4P09016 AC002069.2-201ENST00000603580 883 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 RPL12P48-201ENST00000605620 304 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 AC245014.3-201ENST00000618589 347 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXD4P09016 SLC9B1P1-201ENST00000331172 1337 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 EIF3EP1-201ENST00000433978 1316 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXD4P09016 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXD4P09016 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXD4P09016 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
HOXD4P09016 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXD4P09016 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXD4P09016 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXD4P09016 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXD4P09016 ZNF101P1-201ENST00000435701 1720 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 AL442128.2-201ENST00000620246 1824 ntBASIC5.62□□□□□ -1.51
HOXD4P09016 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXD4P09016 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
HOXD4P09016 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXD4P09016 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
HOXD4P09016 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
HOXD4P09016 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
HOXD4P09016 MAPK10-338ENST00000641647 3362 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
HOXD4P09016 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
HOXD4P09016 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC5.61□□□□□ -1.51
HOXD4P09016 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
HOXD4P09016 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 SNORA51.1-201ENST00000363243 140 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 SNORD8-201ENST00000363915 110 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 RNA5SP510-201ENST00000364697 99 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 RN7SKP69-201ENST00000365390 305 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
HOXD4P09016 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 AL031985.1-201ENST00000392713 418 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 RN7SKP121-201ENST00000410842 305 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 TMA16P2-201ENST00000413187 601 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXD4P09016 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXD4P09016 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXD4P09016 AL356481.1-202ENST00000426704 970 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXD4P09016 TRIM60P16-201ENST00000444048 694 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 AC099654.3-201ENST00000447087 1546 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 AL359839.1-201ENST00000451975 1160 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 PPIAP7-201ENST00000454070 489 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 AL133351.3-201ENST00000454998 193 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 AC098847.1-201ENST00000473094 348 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 AC092865.4-201ENST00000477936 615 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 RPL34P33-201ENST00000486062 334 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 NPM1P28-201ENST00000492269 840 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 AC097486.1-201ENST00000515331 210 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXD4P09016 IGKV3D-25-201ENST00000519599 235 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 IGHV1-14-201ENST00000523391 241 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 AP000620.1-201ENST00000527147 504 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
HOXD4P09016 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
HOXD4P09016 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
HOXD4P09016 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXD4P09016 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC5.61□□□□□ -1.51
HOXD4P09016 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXD4P09016 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 AC007956.1-201ENST00000555623 542 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXD4P09016 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXD4P09016 AC007346.1-201ENST00000569208 867 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 RN7SL475P-201ENST00000583379 298 ntBASIC5.61□□□□□ -1.51
HOXD4P09016 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXD4P09016 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXD4P09016 AL139041.1-201ENST00000605480 610 ntBASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms