Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 ING3-204ENST00000431467 1447 ntTSL 2 BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 AL592429.1-201ENST00000403909 1473 ntBASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 FAM32BP-201ENST00000344033 333 ntBASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 Z84478.1-201ENST00000438230 1219 ntBASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 EEF1B2P6-201ENST00000445713 673 ntBASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 AC112187.1-201ENST00000455837 479 ntBASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 RN7SL72P-201ENST00000460697 269 ntBASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 AC009656.1-201ENST00000531966 478 ntTSL 3 BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 LDHC-203ENST00000535809 757 ntTSL 5 BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 LDHC-205ENST00000537486 583 ntTSL 5 BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 AC096996.1-201ENST00000563813 325 ntBASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 CASC19-264ENST00000641912 1184 ntBASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 AC092821.2-201ENST00000545710 2042 ntBASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 TOM1L1-220ENST00000575333 1849 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
SHROOM4Q9ULL8 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 AC103563.5-201ENST00000455643 364 ntBASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 AL139407.1-201ENST00000613826 1175 ntBASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 MIR6810-201ENST00000622701 70 ntBASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 AC130448.2-201ENST00000624082 374 ntBASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 AC003992.1-201ENST00000635364 557 ntBASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 PARP4P1-201ENST00000435945 2337 ntBASIC11.34□□□□□ -0.59
SHROOM4Q9ULL8 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
SHROOM4Q9ULL8 LINC02019-201ENST00000608605 2060 ntBASIC11.33□□□□□ -0.59
SHROOM4Q9ULL8 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC11.33□□□□□ -0.59
SHROOM4Q9ULL8 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 OR10R3P-201ENST00000361688 942 ntBASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 RN7SKP273-201ENST00000411392 314 ntBASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 NMD3P2-201ENST00000421815 761 ntBASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 RPS12P17-201ENST00000438591 377 ntBASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 LRRC37A14P-201ENST00000452297 462 ntBASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 AL512329.2-201ENST00000607350 548 ntBASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 AC007683.2-201ENST00000624681 714 ntBASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 AC022919.1-201ENST00000624979 626 ntBASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 AC023421.1-201ENST00000590535 1785 ntBASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
SHROOM4Q9ULL8 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 RNU105B-201ENST00000364478 208 ntBASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 RBMY2KP-201ENST00000418221 992 ntBASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 AL139148.1-201ENST00000427122 680 ntBASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 RPS3AP15-201ENST00000483874 781 ntBASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 USP9YP2-201ENST00000504503 1000 ntBASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 HIGD1AP14-201ENST00000507617 282 ntBASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 AC253576.1-201ENST00000511645 1156 ntBASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 USP9YP1-201ENST00000513521 1002 ntBASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 AC021766.1-201ENST00000624404 741 ntBASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 RPL12P3-201ENST00000440080 396 ntBASIC11.32□□□□□ -0.6
SHROOM4Q9ULL8 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC11.32□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms