Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 AC099677.3-201ENST00000427081 395 ntBASIC8.9□□□□□ -0.98
SCAPERQ9BY12 RPS12P17-201ENST00000438591 377 ntBASIC8.9□□□□□ -0.98
SCAPERQ9BY12 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC8.9□□□□□ -0.98
SCAPERQ9BY12 MORF4L1P4-201ENST00000450245 976 ntBASIC8.9□□□□□ -0.98
SCAPERQ9BY12 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC8.9□□□□□ -0.98
SCAPERQ9BY12 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC8.9□□□□□ -0.98
SCAPERQ9BY12 AC004825.1-201ENST00000555068 586 ntBASIC8.9□□□□□ -0.98
SCAPERQ9BY12 AP002884.5-201ENST00000595053 1132 ntBASIC8.9□□□□□ -0.98
SCAPERQ9BY12 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC8.9□□□□□ -0.98
SCAPERQ9BY12 AL139407.1-201ENST00000613826 1175 ntBASIC8.9□□□□□ -0.98
SCAPERQ9BY12 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC8.9□□□□□ -0.98
SCAPERQ9BY12 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
SCAPERQ9BY12 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC8.9□□□□□ -0.98
SCAPERQ9BY12 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC8.9□□□□□ -0.98
SCAPERQ9BY12 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
SCAPERQ9BY12 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
SCAPERQ9BY12 AL355377.1-201ENST00000621125 1653 ntBASIC8.89□□□□□ -0.99
SCAPERQ9BY12 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 RNA5SP131-201ENST00000365452 119 ntBASIC8.89□□□□□ -0.99
SCAPERQ9BY12 MIR223-201ENST00000385204 110 ntBASIC8.89□□□□□ -0.99
SCAPERQ9BY12 RN7SKP166-201ENST00000410812 305 ntBASIC8.89□□□□□ -0.99
SCAPERQ9BY12 PTCD2P2-201ENST00000415579 1095 ntBASIC8.89□□□□□ -0.99
SCAPERQ9BY12 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 AL590762.4-201ENST00000425885 253 ntBASIC8.89□□□□□ -0.99
SCAPERQ9BY12 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 AC079841.1-201ENST00000481228 950 ntBASIC8.89□□□□□ -0.99
SCAPERQ9BY12 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 AC096754.1-201ENST00000508904 818 ntBASIC8.89□□□□□ -0.99
SCAPERQ9BY12 SCARNA6.1-201ENST00000516989 238 ntBASIC8.89□□□□□ -0.99
SCAPERQ9BY12 OR8G3P-201ENST00000533406 921 ntBASIC8.89□□□□□ -0.99
SCAPERQ9BY12 DCN-210ENST00000547568 823 ntTSL 3 BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 AL591848.4-201ENST00000567832 3472 ntBASIC8.89□□□□□ -0.99
SCAPERQ9BY12 AC096921.2-201ENST00000561507 1916 ntBASIC8.89□□□□□ -0.99
SCAPERQ9BY12 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 AC023421.1-201ENST00000590535 1785 ntBASIC8.89□□□□□ -0.99
SCAPERQ9BY12 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 CD86-204ENST00000469710 1604 ntTSL 2 BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 AP002370.1-201ENST00000528055 1602 ntBASIC8.89□□□□□ -0.99
SCAPERQ9BY12 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 AL133243.4-201ENST00000623116 3109 ntBASIC8.89□□□□□ -0.99
SCAPERQ9BY12 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
SCAPERQ9BY12 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 OR2W4P-201ENST00000406496 926 ntBASIC8.88□□□□□ -0.99
SCAPERQ9BY12 RBMY2KP-201ENST00000418221 992 ntBASIC8.88□□□□□ -0.99
SCAPERQ9BY12 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 AC010245.2-201ENST00000606908 1167 ntBASIC8.88□□□□□ -0.99
SCAPERQ9BY12 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 LINC02035-201ENST00000610128 5476 ntBASIC8.88□□□□□ -0.99
SCAPERQ9BY12 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 UFL1-201ENST00000369278 4224 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 U8.4-201ENST00000363626 134 ntBASIC8.88□□□□□ -0.99
SCAPERQ9BY12 MIR550A3-201ENST00000390735 95 ntBASIC8.88□□□□□ -0.99
SCAPERQ9BY12 AL357752.1-201ENST00000412817 349 ntBASIC8.88□□□□□ -0.99
SCAPERQ9BY12 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 FABP7P2-201ENST00000429946 379 ntBASIC8.88□□□□□ -0.99
SCAPERQ9BY12 CYCSP12-201ENST00000437729 300 ntBASIC8.88□□□□□ -0.99
SCAPERQ9BY12 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 AL645937.3-201ENST00000453647 936 ntBASIC8.88□□□□□ -0.99
SCAPERQ9BY12 AC108161.1-201ENST00000461060 402 ntBASIC8.88□□□□□ -0.99
SCAPERQ9BY12 RPL32P33-201ENST00000487023 394 ntBASIC8.88□□□□□ -0.99
SCAPERQ9BY12 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC8.88□□□□□ -0.99
SCAPERQ9BY12 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC8.88□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms