Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC28BQ9BUN5 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC28BQ9BUN5 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC28BQ9BUN5 FANCD2P2-201ENST00000437591 1400 ntBASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 ZCWPW2-201ENST00000383768 1716 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 AC012078.1-201ENST00000405035 1646 ntBASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 Y_RNA.209-201ENST00000364156 111 ntBASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 SNORA7A-201ENST00000384765 139 ntBASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 MIR301B-201ENST00000390813 78 ntBASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 RPL11P3-201ENST00000395256 523 ntBASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 SLC25A24P1-202ENST00000434803 1220 ntBASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 AL133351.3-201ENST00000454998 193 ntBASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 AC018980.1-201ENST00000457848 862 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 GM2AP2-201ENST00000491764 562 ntBASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 RNU6-513P-201ENST00000516104 104 ntBASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 AP002004.1-206ENST00000532441 876 ntBASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 LRTOMT-217ENST00000539587 428 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 LSM3P2-201ENST00000551246 273 ntBASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 MIR6726-201ENST00000613751 61 ntBASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 AC241377.1-201ENST00000619797 406 ntBASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 OXSM-209ENST00000626005 309 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 TEX41-271ENST00000628213 993 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 AC004023.1-201ENST00000561473 1744 ntBASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC28BQ9BUN5 AC005005.4-201ENST00000623789 16698 ntBASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 DTNA-221ENST00000591182 1787 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 IGKV6D-41-201ENST00000390271 371 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 AL139100.1-201ENST00000408001 498 ntBASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 PLGLB1-202ENST00000409310 960 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 RNA5SP155-201ENST00000411154 129 ntBASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 AL138479.1-201ENST00000426913 484 ntBASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 CRIP1P1-201ENST00000427567 185 ntBASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 OR2L9P-201ENST00000444456 913 ntBASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 RPL12P39-201ENST00000455456 496 ntBASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 RNA5SP434-201ENST00000516647 121 ntBASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 ODF1-202ENST00000518835 368 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 AC103855.4-201ENST00000533158 265 ntBASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 AC090424.1-201ENST00000535243 736 ntBASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 PSMC1P8-201ENST00000536820 1296 ntBASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 AC084824.2-201ENST00000548906 345 ntBASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 AC016383.1-201ENST00000582700 714 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 PRL-202ENST00000615510 1268 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 AC239868.2-201ENST00000564237 4527 ntBASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC28BQ9BUN5 NDFIP2-203ENST00000487865 1384 ntTSL 2 BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms