Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
VPS39Q96JC1 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VPS39Q96JC1 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
VPS39Q96JC1 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VPS39Q96JC1 RN7SKP184-201ENST00000362348 333 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 SNORA64.3-201ENST00000365647 134 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
VPS39Q96JC1 AL034417.1-201ENST00000399343 800 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 RN7SKP166-201ENST00000410812 305 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 MTND4LP21-201ENST00000415303 295 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC6.06□□□□□ -1.44
VPS39Q96JC1 RPS3AP38-201ENST00000435889 763 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 AC013403.1-201ENST00000436954 263 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 AC064862.5-201ENST00000440618 334 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 AC234771.2-201ENST00000445718 597 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 SEPHS1P4-201ENST00000446112 1176 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.06□□□□□ -1.44
VPS39Q96JC1 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC6.06□□□□□ -1.44
VPS39Q96JC1 RPL34P33-201ENST00000486062 334 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC6.06□□□□□ -1.44
VPS39Q96JC1 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC6.06□□□□□ -1.44
VPS39Q96JC1 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC6.06□□□□□ -1.44
VPS39Q96JC1 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VPS39Q96JC1 AC007342.5-201ENST00000571340 2142 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC6.06□□□□□ -1.44
VPS39Q96JC1 AP001267.4-201ENST00000602598 545 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 AP001823.1-201ENST00000604056 1003 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 AL031658.2-201ENST00000616850 651 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 AL122023.1-201ENST00000622847 530 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC6.06□□□□□ -1.44
VPS39Q96JC1 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC6.06□□□□□ -1.44
VPS39Q96JC1 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VPS39Q96JC1 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VPS39Q96JC1 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
VPS39Q96JC1 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VPS39Q96JC1 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.06□□□□□ -1.44
VPS39Q96JC1 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
VPS39Q96JC1 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
VPS39Q96JC1 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC6.06□□□□□ -1.44
VPS39Q96JC1 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VPS39Q96JC1 CASC19-238ENST00000641523 1558 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS39Q96JC1 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS39Q96JC1 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS39Q96JC1 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VPS39Q96JC1 AC018717.1-201ENST00000457712 1505 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS39Q96JC1 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS39Q96JC1 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS39Q96JC1 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VPS39Q96JC1 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VPS39Q96JC1 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VPS39Q96JC1 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 PSMA6P1-201ENST00000400275 741 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 AL589994.1-201ENST00000404962 340 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 AL139805.1-201ENST00000407837 289 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 RNA5SP156-201ENST00000410250 110 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 RPS15AP30-201ENST00000420976 390 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 RPL7AP14-201ENST00000424041 802 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 RPL12P16-201ENST00000431098 498 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 USP24P1-201ENST00000433802 779 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 DNAJC19P5-201ENST00000443295 316 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 AC092601.1-201ENST00000444526 383 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 TRBV5-2-201ENST00000489095 273 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 CCDC11P1-201ENST00000503137 1162 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 RNA5SP434-201ENST00000516647 121 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VPS39Q96JC1 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 AC009237.12-201ENST00000604755 742 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 AL138960.1-201ENST00000613838 513 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 AL359955.1-201ENST00000455242 3275 ntBASIC6.05□□□□□ -1.44
VPS39Q96JC1 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VPS39Q96JC1 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.05□□□□□ -1.44
VPS39Q96JC1 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VPS39Q96JC1 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS39Q96JC1 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS39Q96JC1 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms