Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AC016583.1-201ENST00000624221 2431 ntBASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 MTHFD2P5-201ENST00000320415 844 ntBASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 RN7SKP29-201ENST00000410957 272 ntBASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AL353626.3-201ENST00000413399 657 ntBASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AL663074.2-201ENST00000440621 479 ntBASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AC112187.1-201ENST00000455837 479 ntBASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 RNA5SP228-201ENST00000516232 133 ntBASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AC145423.1-201ENST00000605712 336 ntBASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 PCBP1-AS1-230ENST00000439670 2180 ntTSL 2 BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 FO393409.1-201ENST00000399325 1372 ntBASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 RPS15AP30-201ENST00000420976 390 ntBASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 RPL7AP6-201ENST00000477943 801 ntBASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 MIR6820-201ENST00000611508 62 ntBASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 AC024255.1-201ENST00000614376 102 ntBASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC88AQ3V6T2 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 AC105749.1-201ENST00000631338 2008 ntBASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 RPA2P2-201ENST00000419698 796 ntBASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 AC103563.5-201ENST00000455643 364 ntBASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 AC108161.1-201ENST00000461060 402 ntBASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 AC114728.1-201ENST00000488289 483 ntBASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 AOX3P-204ENST00000491025 2107 ntBASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 AC147055.3-201ENST00000510547 851 ntBASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 AC073916.1-201ENST00000545095 130 ntBASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 NOP10-202ENST00000557912 436 ntTSL 2 BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 AC106730.2-201ENST00000566641 540 ntBASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 AC091193.1-201ENST00000604640 448 ntBASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 METTL15-211ENST00000634762 718 ntTSL 5 BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 AL034408.1-201ENST00000637712 664 ntBASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 ING3-204ENST00000431467 1447 ntTSL 2 BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 AL592429.1-201ENST00000403909 1473 ntBASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 AC100832.1-201ENST00000471945 383 ntBASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 OARD1-211ENST00000480585 829 ntTSL 3 BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 RN7SL30P-201ENST00000488416 306 ntBASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 AC008115.4-201ENST00000619780 775 ntBASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 SAMMSON-227ENST00000642114 1199 ntBASIC7.24□□□□□ -1.25
CCDC88AQ3V6T2 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 AC110716.2-201ENST00000563865 3945 ntBASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 HYDIN2-203ENST00000614586 13885 ntBASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
CCDC88AQ3V6T2 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC7.23□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 181.1 ms