Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HLA-DMBP28068 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
HLA-DMBP28068 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
HLA-DMBP28068 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC4.61□□□□□ -1.67
HLA-DMBP28068 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC4.61□□□□□ -1.67
HLA-DMBP28068 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC4.61□□□□□ -1.67
HLA-DMBP28068 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HLA-DMBP28068 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC4.61□□□□□ -1.67
HLA-DMBP28068 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HLA-DMBP28068 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HLA-DMBP28068 AL591135.1-201ENST00000401578 5914 ntBASIC4.61□□□□□ -1.67
HLA-DMBP28068 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HLA-DMBP28068 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
HLA-DMBP28068 AC119674.1-202ENST00000641333 1860 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HLA-DMBP28068 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HLA-DMBP28068 AC026523.2-201ENST00000625039 7739 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HLA-DMBP28068 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HLA-DMBP28068 RBBP4P5-201ENST00000398583 1266 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 AC099782.1-201ENST00000425889 474 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 KRTAP2-5P-201ENST00000446109 396 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 AL162739.1-201ENST00000450606 307 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 HIGD1AP16-201ENST00000450986 258 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 RPL37P23-201ENST00000492641 294 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HLA-DMBP28068 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HLA-DMBP28068 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 AC016839.1-201ENST00000578162 867 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 AP001267.4-201ENST00000602598 545 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 RPSAP75-201ENST00000605848 301 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 AL135999.3-201ENST00000610501 812 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 uc_338.31-201ENST00000615595 186 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 AL109924.4-201ENST00000623089 670 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 OXSM-209ENST00000626005 309 ntTSL 3 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 AC111152.1-202ENST00000635848 339 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HLA-DMBP28068 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HLA-DMBP28068 AC114876.1-201ENST00000490962 1366 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HLA-DMBP28068 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
HLA-DMBP28068 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HLA-DMBP28068 AL161756.3-201ENST00000641216 2071 ntBASIC4.6□□□□□ -1.67
HLA-DMBP28068 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC4.6□□□□□ -1.67
HLA-DMBP28068 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
HLA-DMBP28068 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
HLA-DMBP28068 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC4.59□□□□□ -1.67
HLA-DMBP28068 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC4.59□□□□□ -1.67
HLA-DMBP28068 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HLA-DMBP28068 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
HLA-DMBP28068 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC4.59□□□□□ -1.67
HLA-DMBP28068 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
HLA-DMBP28068 MIR188-201ENST00000385034 86 ntBASIC4.59□□□□□ -1.67
HLA-DMBP28068 YWHAZP6-201ENST00000399764 738 ntBASIC4.59□□□□□ -1.67
HLA-DMBP28068 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
HLA-DMBP28068 PTCD2P2-201ENST00000415579 1095 ntBASIC4.59□□□□□ -1.67
HLA-DMBP28068 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HLA-DMBP28068 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC4.59□□□□□ -1.67
HLA-DMBP28068 CCNB1IP1P1-201ENST00000428976 839 ntBASIC4.59□□□□□ -1.67
HLA-DMBP28068 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HLA-DMBP28068 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC4.59□□□□□ -1.67
HLA-DMBP28068 USP24P1-201ENST00000433802 779 ntBASIC4.59□□□□□ -1.67
HLA-DMBP28068 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC4.59□□□□□ -1.67
HLA-DMBP28068 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
HLA-DMBP28068 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC4.59□□□□□ -1.67
HLA-DMBP28068 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HLA-DMBP28068 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HLA-DMBP28068 RPSAP40-201ENST00000442343 891 ntBASIC4.59□□□□□ -1.67
HLA-DMBP28068 AL512593.1-201ENST00000444758 779 ntBASIC4.59□□□□□ -1.67
HLA-DMBP28068 POU5F1P5-201ENST00000445059 658 ntBASIC4.59□□□□□ -1.67
HLA-DMBP28068 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC4.59□□□□□ -1.67
HLA-DMBP28068 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HLA-DMBP28068 ACA64.4-201ENST00000459070 127 ntBASIC4.59□□□□□ -1.67
HLA-DMBP28068 RPL34P33-201ENST00000486062 334 ntBASIC4.59□□□□□ -1.67
HLA-DMBP28068 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC4.59□□□□□ -1.67
HLA-DMBP28068 AC018797.1-201ENST00000510791 255 ntBASIC4.59□□□□□ -1.67
HLA-DMBP28068 AC108103.1-201ENST00000511286 446 ntBASIC4.59□□□□□ -1.67
HLA-DMBP28068 MAST4-IT1-201ENST00000514241 658 ntBASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms