Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 AL645936.1-201ENST00000441979 518 ntBASIC6.08□□□□□ -1.44
VPS39Q96JC1 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 RARRES2P3-201ENST00000457739 473 ntBASIC6.08□□□□□ -1.44
VPS39Q96JC1 RBMY2HP-201ENST00000457961 720 ntBASIC6.08□□□□□ -1.44
VPS39Q96JC1 AC124945.1-201ENST00000485133 188 ntBASIC6.08□□□□□ -1.44
VPS39Q96JC1 RPL23AP40-201ENST00000487630 390 ntBASIC6.08□□□□□ -1.44
VPS39Q96JC1 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 MRPS5P3-201ENST00000515577 166 ntBASIC6.08□□□□□ -1.44
VPS39Q96JC1 SNORA74.1-201ENST00000516320 180 ntBASIC6.08□□□□□ -1.44
VPS39Q96JC1 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 AC008126.1-201ENST00000549019 480 ntBASIC6.08□□□□□ -1.44
VPS39Q96JC1 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 IGKV2OR2-1-201ENST00000605129 304 ntBASIC6.08□□□□□ -1.44
VPS39Q96JC1 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 AL352984.2-202ENST00000613699 155 ntBASIC6.08□□□□□ -1.44
VPS39Q96JC1 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
VPS39Q96JC1 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 AC134980.1-214ENST00000638815 687 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
VPS39Q96JC1 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
VPS39Q96JC1 AC007842.1-201ENST00000597336 2039 ntBASIC6.08□□□□□ -1.44
VPS39Q96JC1 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
VPS39Q96JC1 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
VPS39Q96JC1 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
VPS39Q96JC1 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
VPS39Q96JC1 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 RNA5SP375-201ENST00000362975 119 ntBASIC6.07□□□□□ -1.44
VPS39Q96JC1 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS39Q96JC1 AC117434.1-201ENST00000419971 836 ntBASIC6.07□□□□□ -1.44
VPS39Q96JC1 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS39Q96JC1 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 ARMC4P1-201ENST00000438905 707 ntBASIC6.07□□□□□ -1.44
VPS39Q96JC1 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 AC245291.3-201ENST00000443400 292 ntBASIC6.07□□□□□ -1.44
VPS39Q96JC1 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 SNRPCP11-201ENST00000492453 205 ntBASIC6.07□□□□□ -1.44
VPS39Q96JC1 AC117500.1-201ENST00000497352 755 ntBASIC6.07□□□□□ -1.44
VPS39Q96JC1 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS39Q96JC1 RFPL4AP3-201ENST00000515267 345 ntBASIC6.07□□□□□ -1.44
VPS39Q96JC1 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 MIR744-201ENST00000578242 98 ntBASIC6.07□□□□□ -1.44
VPS39Q96JC1 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 MIR3157-201ENST00000578688 85 ntBASIC6.07□□□□□ -1.44
VPS39Q96JC1 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 AC063977.7-201ENST00000594454 337 ntBASIC6.07□□□□□ -1.44
VPS39Q96JC1 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS39Q96JC1 AL136097.3-201ENST00000611097 505 ntBASIC6.07□□□□□ -1.44
VPS39Q96JC1 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS39Q96JC1 AL356752.1-201ENST00000615844 593 ntBASIC6.07□□□□□ -1.44
VPS39Q96JC1 AC089999.3-201ENST00000622440 577 ntBASIC6.07□□□□□ -1.44
VPS39Q96JC1 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS39Q96JC1 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS39Q96JC1 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS39Q96JC1 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS39Q96JC1 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS39Q96JC1 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 STK3-216ENST00000523601 3107 ntTSL 2 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
VPS39Q96JC1 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS39Q96JC1 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.07□□□□□ -1.44
VPS39Q96JC1 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
VPS39Q96JC1 EIF3EP1-201ENST00000433978 1316 ntBASIC6.06□□□□□ -1.44
VPS39Q96JC1 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VPS39Q96JC1 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VPS39Q96JC1 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.06□□□□□ -1.44
VPS39Q96JC1 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VPS39Q96JC1 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms