Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 AC244517.3-201ENST00000616254 1235 ntBASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 LINC01616-201ENST00000561816 2280 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 CR788268.1-201ENST00000603931 1809 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 MTHFD2P5-201ENST00000320415 844 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 RNA5SP333-201ENST00000363466 118 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 RNA5SP334-201ENST00000364825 118 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AL445238.1-204ENST00000400311 463 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 RPS7P8-201ENST00000418311 581 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 RN7SL273P-201ENST00000481561 299 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AC112191.2-201ENST00000522428 333 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AC021269.1-201ENST00000526860 705 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 LDHC-205ENST00000537486 583 ntTSL 5 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AC092865.1-201ENST00000544395 1023 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AC073916.1-201ENST00000545095 130 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AC092121.1-201ENST00000569452 202 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AC068768.2-201ENST00000602352 343 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AL583832.1-201ENST00000603227 784 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AL512624.1-201ENST00000613638 469 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 CGA-206ENST00000630630 832 ntTSL 2 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 AC116158.1-201ENST00000560231 2129 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 ZNF658B-201ENST00000602828 3408 ntBASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HDDC3Q8N4P3 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AC024651.2-201ENST00000562480 2098 ntBASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 RNA5SP477-201ENST00000362639 119 ntBASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 TUBB4BP6-201ENST00000437576 479 ntBASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 SEPT14P12-201ENST00000442280 560 ntBASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AC092967.1-201ENST00000449016 481 ntBASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 RPSAP37-201ENST00000470913 821 ntBASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AL136038.1-201ENST00000497246 351 ntBASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 184.1 ms