Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
LIM2P55344 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIM2P55344 AC012254.3-201ENST00000591183 2117 ntBASIC5.66□□□□□ -1.5
LIM2P55344 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIM2P55344 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LIM2P55344 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LIM2P55344 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
LIM2P55344 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.66□□□□□ -1.5
LIM2P55344 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.66□□□□□ -1.5
LIM2P55344 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
LIM2P55344 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
LIM2P55344 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
LIM2P55344 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
LIM2P55344 AL096711.1-201ENST00000404780 554 ntBASIC5.66□□□□□ -1.5
LIM2P55344 RPL35AP3-201ENST00000414680 288 ntBASIC5.66□□□□□ -1.5
LIM2P55344 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.66□□□□□ -1.5
LIM2P55344 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.66□□□□□ -1.5
LIM2P55344 AC021876.1-201ENST00000425959 359 ntBASIC5.66□□□□□ -1.5
LIM2P55344 CUBNP2-201ENST00000443534 1139 ntBASIC5.66□□□□□ -1.5
LIM2P55344 snoU13.29-201ENST00000459370 104 ntBASIC5.66□□□□□ -1.5
LIM2P55344 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC5.66□□□□□ -1.5
LIM2P55344 RN7SL269P-201ENST00000467795 305 ntBASIC5.66□□□□□ -1.5
LIM2P55344 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC5.66□□□□□ -1.5
LIM2P55344 LSM3P4-201ENST00000502948 309 ntBASIC5.66□□□□□ -1.5
LIM2P55344 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC5.66□□□□□ -1.5
LIM2P55344 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.66□□□□□ -1.5
LIM2P55344 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC5.66□□□□□ -1.5
LIM2P55344 RNA5SP340-201ENST00000517132 107 ntBASIC5.66□□□□□ -1.5
LIM2P55344 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.66□□□□□ -1.5
LIM2P55344 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.66□□□□□ -1.5
LIM2P55344 HNRNPCP1-201ENST00000556181 766 ntBASIC5.66□□□□□ -1.5
LIM2P55344 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.66□□□□□ -1.5
LIM2P55344 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC5.66□□□□□ -1.5
LIM2P55344 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC5.66□□□□□ -1.5
LIM2P55344 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC5.66□□□□□ -1.5
LIM2P55344 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC5.66□□□□□ -1.5
LIM2P55344 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC5.66□□□□□ -1.5
LIM2P55344 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC5.66□□□□□ -1.5
LIM2P55344 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.66□□□□□ -1.5
LIM2P55344 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.66□□□□□ -1.5
LIM2P55344 AC010809.3-201ENST00000621310 641 ntBASIC5.66□□□□□ -1.5
LIM2P55344 OR8A1-204ENST00000642111 1145 ntBASIC5.66□□□□□ -1.5
LIM2P55344 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIM2P55344 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC5.66□□□□□ -1.5
LIM2P55344 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIM2P55344 CASC19-238ENST00000641523 1558 ntBASIC5.66□□□□□ -1.5
LIM2P55344 THAP12P9-201ENST00000503971 2360 ntBASIC5.66□□□□□ -1.5
LIM2P55344 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.66□□□□□ -1.5
LIM2P55344 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
LIM2P55344 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
LIM2P55344 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LIM2P55344 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.66□□□□□ -1.5
LIM2P55344 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIM2P55344 AL359955.1-201ENST00000455242 3275 ntBASIC5.66□□□□□ -1.5
LIM2P55344 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
LIM2P55344 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.66□□□□□ -1.5
LIM2P55344 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.66□□□□□ -1.5
LIM2P55344 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIM2P55344 MAPK10-261ENST00000641050 3109 ntBASIC5.65□□□□□ -1.5
LIM2P55344 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
LIM2P55344 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIM2P55344 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIM2P55344 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
LIM2P55344 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIM2P55344 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
LIM2P55344 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIM2P55344 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.65□□□□□ -1.5
LIM2P55344 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
LIM2P55344 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC5.65□□□□□ -1.5
LIM2P55344 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC5.65□□□□□ -1.5
LIM2P55344 CXADRP1-201ENST00000398098 1095 ntBASIC5.65□□□□□ -1.5
LIM2P55344 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
LIM2P55344 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC5.65□□□□□ -1.5
LIM2P55344 GAPDHP75-201ENST00000433910 943 ntBASIC5.65□□□□□ -1.5
LIM2P55344 AC110602.1-201ENST00000437414 318 ntBASIC5.65□□□□□ -1.5
LIM2P55344 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.65□□□□□ -1.5
LIM2P55344 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIM2P55344 CFL1P4-201ENST00000451536 498 ntBASIC5.65□□□□□ -1.5
LIM2P55344 AC023245.1-201ENST00000468501 517 ntBASIC5.65□□□□□ -1.5
LIM2P55344 AC008629.2-201ENST00000503783 483 ntBASIC5.65□□□□□ -1.5
LIM2P55344 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.65□□□□□ -1.5
LIM2P55344 AP003396.4-201ENST00000527574 265 ntBASIC5.65□□□□□ -1.5
LIM2P55344 BCAS2P1-201ENST00000528022 632 ntBASIC5.65□□□□□ -1.5
LIM2P55344 ASB8-203ENST00000535988 679 ntTSL 2 BASIC5.65□□□□□ -1.5
LIM2P55344 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.65□□□□□ -1.5
LIM2P55344 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC5.65□□□□□ -1.5
LIM2P55344 AC079905.1-201ENST00000549280 475 ntBASIC5.65□□□□□ -1.5
LIM2P55344 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.65□□□□□ -1.5
LIM2P55344 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC5.65□□□□□ -1.5
LIM2P55344 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.65□□□□□ -1.5
LIM2P55344 AC007956.1-201ENST00000555623 542 ntBASIC5.65□□□□□ -1.5
LIM2P55344 AL049779.3-201ENST00000557141 606 ntBASIC5.65□□□□□ -1.5
LIM2P55344 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.65□□□□□ -1.5
LIM2P55344 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.65□□□□□ -1.5
LIM2P55344 MRPS21P9-201ENST00000571150 257 ntBASIC5.65□□□□□ -1.5
LIM2P55344 AC005244.1-201ENST00000582566 339 ntBASIC5.65□□□□□ -1.5
LIM2P55344 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.65□□□□□ -1.5
LIM2P55344 AC090236.2-201ENST00000587933 1101 ntBASIC5.65□□□□□ -1.5
LIM2P55344 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC5.65□□□□□ -1.5
LIM2P55344 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms