Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 GRM7-AS2-201ENST00000427748 520 ntTSL 2 BASIC4.42□□□□□ -1.7
FOXA3P55318 CENPN-204ENST00000428963 971 ntTSL 2 BASIC4.42□□□□□ -1.7
FOXA3P55318 VN1R53P-201ENST00000429536 957 ntBASIC4.42□□□□□ -1.7
FOXA3P55318 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC4.42□□□□□ -1.7
FOXA3P55318 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC4.42□□□□□ -1.7
FOXA3P55318 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.42□□□□□ -1.7
FOXA3P55318 AC108479.1-201ENST00000431142 427 ntBASIC4.42□□□□□ -1.7
FOXA3P55318 LRRC28-203ENST00000447360 1235 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA3P55318 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA3P55318 AKR1D1P1-201ENST00000457236 936 ntBASIC4.42□□□□□ -1.7
FOXA3P55318 RN7SL70P-201ENST00000478322 302 ntBASIC4.42□□□□□ -1.7
FOXA3P55318 TRIM75P-201ENST00000503032 1407 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
FOXA3P55318 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC4.42□□□□□ -1.7
FOXA3P55318 LINC01559-203ENST00000531049 683 ntTSL 3 BASIC4.42□□□□□ -1.7
FOXA3P55318 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC4.42□□□□□ -1.7
FOXA3P55318 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC4.42□□□□□ -1.7
FOXA3P55318 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC4.42□□□□□ -1.7
FOXA3P55318 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA3P55318 RPS4XP16-202ENST00000595905 807 ntTSL 5 BASIC4.42□□□□□ -1.7
FOXA3P55318 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC4.42□□□□□ -1.7
FOXA3P55318 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA3P55318 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC4.42□□□□□ -1.7
FOXA3P55318 AL353729.2-201ENST00000605859 1249 ntBASIC4.42□□□□□ -1.7
FOXA3P55318 MIR4435-2HG-219ENST00000609220 883 ntTSL 3 BASIC4.42□□□□□ -1.7
FOXA3P55318 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC4.42□□□□□ -1.7
FOXA3P55318 AL162574.1-201ENST00000615702 950 ntBASIC4.42□□□□□ -1.7
FOXA3P55318 AC027506.1-201ENST00000621395 198 ntBASIC4.42□□□□□ -1.7
FOXA3P55318 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
FOXA3P55318 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
FOXA3P55318 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA3P55318 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA3P55318 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC4.42□□□□□ -1.7
FOXA3P55318 AC093849.1-201ENST00000563631 2209 ntBASIC4.42□□□□□ -1.7
FOXA3P55318 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA3P55318 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA3P55318 WAC-209ENST00000428935 1320 ntTSL 2 BASIC4.42□□□□□ -1.7
FOXA3P55318 AC083899.1-201ENST00000454465 3819 ntBASIC4.42□□□□□ -1.7
FOXA3P55318 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
FOXA3P55318 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
FOXA3P55318 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
FOXA3P55318 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
FOXA3P55318 OFD1P15Y-201ENST00000411536 1392 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA3P55318 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXA3P55318 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
FOXA3P55318 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC4.41□□□□□ -1.7
FOXA3P55318 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA3P55318 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXA3P55318 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA3P55318 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA3P55318 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA3P55318 RNU1-84P-201ENST00000365447 164 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
FOXA3P55318 TPT1-204ENST00000379060 764 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXA3P55318 HOPX-204ENST00000381260 1141 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXA3P55318 RNU1-136P-201ENST00000384181 164 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXA3P55318 AC024937.2-201ENST00000411669 1242 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 RPL12P10-201ENST00000413498 498 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 LINC01687-203ENST00000420255 897 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA3P55318 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXA3P55318 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXA3P55318 SOCS5P1-201ENST00000440415 949 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC4.41□□□□□ -1.7
FOXA3P55318 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXA3P55318 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXA3P55318 SNORD125-201ENST00000459538 96 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 AC139769.1-201ENST00000471224 1001 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXA3P55318 RPS3AP49-201ENST00000472161 790 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 RPL5P15-201ENST00000475870 897 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 AC005017.1-201ENST00000482002 490 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 RPL21P42-201ENST00000488408 464 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
FOXA3P55318 Y_RNA.710-201ENST00000516975 110 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXA3P55318 OR4A42P-201ENST00000531397 938 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 AC008055.1-201ENST00000547032 609 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 AC023161.1-201ENST00000549532 420 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXA3P55318 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXA3P55318 LINC01146-206ENST00000556684 361 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXA3P55318 AC020892.1-201ENST00000559918 855 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXA3P55318 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA3P55318 TXNP4-201ENST00000575018 310 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 MIR4660-201ENST00000583549 74 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXA3P55318 AC012175.1-201ENST00000603755 531 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 RPS4XP21-201ENST00000603814 750 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXA3P55318 uc_338.26-201ENST00000612659 160 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA3P55318 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXA3P55318 CCDC196-207ENST00000636229 1107 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
FOXA3P55318 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
FOXA3P55318 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA3P55318 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXA3P55318 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA3P55318 MRRFP1-201ENST00000435941 1675 ntBASIC4.41□□□□□ -1.7
FOXA3P55318 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXA3P55318 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXA3P55318 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms