Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC6.28□□□□□ -1.4
COL4A4P53420 Z80107.2-201ENST00000445127 392 ntBASIC6.28□□□□□ -1.4
COL4A4P53420 FRG2FP-204ENST00000453982 852 ntBASIC6.28□□□□□ -1.4
COL4A4P53420 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC6.28□□□□□ -1.4
COL4A4P53420 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC6.28□□□□□ -1.4
COL4A4P53420 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL4A4P53420 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC6.28□□□□□ -1.4
COL4A4P53420 PPATP2-201ENST00000605635 508 ntBASIC6.28□□□□□ -1.4
COL4A4P53420 AC090510.2-201ENST00000617465 629 ntBASIC6.28□□□□□ -1.4
COL4A4P53420 AC087269.2-201ENST00000641764 975 ntBASIC6.28□□□□□ -1.4
COL4A4P53420 Z99129.3-201ENST00000624363 6430 ntTSL 2 BASIC6.28□□□□□ -1.4
COL4A4P53420 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL4A4P53420 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL4A4P53420 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL4A4P53420 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC6.28□□□□□ -1.4
COL4A4P53420 AL592429.1-201ENST00000403909 1473 ntBASIC6.28□□□□□ -1.4
COL4A4P53420 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.28□□□□□ -1.4
COL4A4P53420 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL4A4P53420 ZNF812P-201ENST00000457674 1694 ntBASIC6.28□□□□□ -1.4
COL4A4P53420 MUC3A-203ENST00000483366 9944 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.4
COL4A4P53420 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC6.27□□□□□ -1.4
COL4A4P53420 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL4A4P53420 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC6.27□□□□□ -1.41
COL4A4P53420 CHD7-203ENST00000525508 4777 ntTSL 5 BASIC6.27□□□□□ -1.41
COL4A4P53420 RNA5-8SP5-201ENST00000365304 152 ntBASIC6.27□□□□□ -1.41
COL4A4P53420 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC6.27□□□□□ -1.41
COL4A4P53420 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC6.27□□□□□ -1.41
COL4A4P53420 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC6.27□□□□□ -1.41
COL4A4P53420 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC6.27□□□□□ -1.41
COL4A4P53420 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC6.27□□□□□ -1.41
COL4A4P53420 RPS26P41-201ENST00000450370 284 ntBASIC6.27□□□□□ -1.41
COL4A4P53420 BX284632.1-201ENST00000478218 541 ntBASIC6.27□□□□□ -1.41
COL4A4P53420 AC110775.1-201ENST00000513721 462 ntBASIC6.27□□□□□ -1.41
COL4A4P53420 AC021146.10-201ENST00000515628 706 ntBASIC6.27□□□□□ -1.41
COL4A4P53420 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.27□□□□□ -1.41
COL4A4P53420 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC6.27□□□□□ -1.41
COL4A4P53420 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC6.27□□□□□ -1.41
COL4A4P53420 MIR3691-201ENST00000578066 90 ntBASIC6.27□□□□□ -1.41
COL4A4P53420 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC6.27□□□□□ -1.41
COL4A4P53420 AC006213.6-201ENST00000623722 4179 ntBASIC6.27□□□□□ -1.41
COL4A4P53420 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.27□□□□□ -1.41
COL4A4P53420 AL139805.2-201ENST00000455305 2433 ntBASIC6.27□□□□□ -1.41
COL4A4P53420 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COL4A4P53420 KCNN3-201ENST00000271915 13033 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL4A4P53420 PPARGC1B-201ENST00000309241 10568 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL4A4P53420 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL4A4P53420 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL4A4P53420 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL4A4P53420 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
COL4A4P53420 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL4A4P53420 SVEP1-202ENST00000374469 12194 ntAPPRIS P2 TSL 5 BASIC6.26□□□□□ -1.41
COL4A4P53420 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL4A4P53420 U8.4-201ENST00000363626 134 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 AL360271.1-201ENST00000395679 510 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 AL133270.1-201ENST00000402635 279 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 RPL21P133-201ENST00000443666 476 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 EEF1B2P5-201ENST00000444820 548 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC6.26□□□□□ -1.41
COL4A4P53420 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC6.26□□□□□ -1.41
COL4A4P53420 AL645937.3-201ENST00000453647 936 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 CBX1P2-201ENST00000453841 458 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 AC108161.1-201ENST00000461060 402 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC6.26□□□□□ -1.41
COL4A4P53420 AC253576.1-201ENST00000511645 1156 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 MRPS16P1-201ENST00000523462 412 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.26□□□□□ -1.41
COL4A4P53420 HMGB1P42-201ENST00000532126 553 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC6.26□□□□□ -1.41
COL4A4P53420 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC6.26□□□□□ -1.41
COL4A4P53420 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC6.26□□□□□ -1.41
COL4A4P53420 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC6.26□□□□□ -1.41
COL4A4P53420 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC6.26□□□□□ -1.41
COL4A4P53420 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC6.26□□□□□ -1.41
COL4A4P53420 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC6.26□□□□□ -1.41
COL4A4P53420 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC6.26□□□□□ -1.41
COL4A4P53420 AL359513.1-201ENST00000614364 557 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 AC007683.2-201ENST00000624681 714 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC6.26□□□□□ -1.41
COL4A4P53420 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
COL4A4P53420 AL117378.2-201ENST00000622916 1337 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL4A4P53420 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL4A4P53420 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL4A4P53420 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL4A4P53420 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL4A4P53420 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
COL4A4P53420 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL4A4P53420 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
COL4A4P53420 SRRM1P3-201ENST00000426911 2678 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL4A4P53420 MRRFP1-201ENST00000435941 1675 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC6.26□□□□□ -1.41
COL4A4P53420 ZNFX1-204ENST00000396105 7371 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL4A4P53420 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL4A4P53420 SELENOWP1-201ENST00000322792 252 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 RN7SKP103-201ENST00000363848 320 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC6.26□□□□□ -1.41
COL4A4P53420 AL663074.2-201ENST00000440621 479 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 154.2 ms