Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC7.74□□□□□ -1.17
HMGB1P09429 AC005519.1-201ENST00000554490 601 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC7.74□□□□□ -1.17
HMGB1P09429 AC027176.2-201ENST00000559166 746 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 AC084759.1-201ENST00000561168 290 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC7.74□□□□□ -1.17
HMGB1P09429 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC7.74□□□□□ -1.17
HMGB1P09429 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC7.74□□□□□ -1.17
HMGB1P09429 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC7.74□□□□□ -1.17
HMGB1P09429 AC091193.1-201ENST00000604640 448 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC7.74□□□□□ -1.17
HMGB1P09429 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC7.74□□□□□ -1.17
HMGB1P09429 GAPDHP41-201ENST00000613707 975 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 MIR6070-201ENST00000613967 103 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC7.74□□□□□ -1.17
HMGB1P09429 AL031658.2-201ENST00000616850 651 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 U1.41-201ENST00000617626 165 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC7.74□□□□□ -1.17
HMGB1P09429 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
HMGB1P09429 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
HMGB1P09429 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC7.74□□□□□ -1.17
HMGB1P09429 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC7.74□□□□□ -1.17
HMGB1P09429 AC009313.2-201ENST00000417893 1941 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
HMGB1P09429 AC023245.2-201ENST00000530760 2978 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC7.73□□□□□ -1.17
HMGB1P09429 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
HMGB1P09429 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC7.73□□□□□ -1.17
HMGB1P09429 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
HMGB1P09429 AC004023.1-201ENST00000561473 1744 ntBASIC7.73□□□□□ -1.17
HMGB1P09429 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC7.73□□□□□ -1.17
HMGB1P09429 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC7.73□□□□□ -1.17
HMGB1P09429 AL022323.4-201ENST00000623980 13120 ntBASIC7.73□□□□□ -1.17
HMGB1P09429 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC7.73□□□□□ -1.17
HMGB1P09429 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
HMGB1P09429 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
HMGB1P09429 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC7.73□□□□□ -1.17
HMGB1P09429 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
HMGB1P09429 CHMP1B2P-201ENST00000399581 597 ntBASIC7.73□□□□□ -1.17
HMGB1P09429 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC7.73□□□□□ -1.17
HMGB1P09429 RNU2-50P-201ENST00000410494 143 ntBASIC7.73□□□□□ -1.17
HMGB1P09429 RNA5SP498-201ENST00000411342 120 ntBASIC7.73□□□□□ -1.17
HMGB1P09429 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC7.73□□□□□ -1.17
HMGB1P09429 AL137847.1-201ENST00000416473 444 ntTSL 2 BASIC7.73□□□□□ -1.17
HMGB1P09429 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC7.73□□□□□ -1.17
HMGB1P09429 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC7.73□□□□□ -1.17
HMGB1P09429 AP003385.1-201ENST00000426387 893 ntBASIC7.73□□□□□ -1.17
HMGB1P09429 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC7.73□□□□□ -1.17
HMGB1P09429 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC7.73□□□□□ -1.17
HMGB1P09429 AL500527.1-201ENST00000448532 255 ntBASIC7.73□□□□□ -1.17
HMGB1P09429 CCNJP1-201ENST00000450600 1149 ntBASIC7.73□□□□□ -1.17
HMGB1P09429 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC7.73□□□□□ -1.17
HMGB1P09429 BBOF1-202ENST00000463558 550 ntAPPRIS ALT2 TSL 2 BASIC7.73□□□□□ -1.17
HMGB1P09429 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC7.73□□□□□ -1.17
HMGB1P09429 RPL5P14-201ENST00000494197 878 ntBASIC7.73□□□□□ -1.17
HMGB1P09429 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC7.73□□□□□ -1.17
HMGB1P09429 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC7.73□□□□□ -1.17
HMGB1P09429 DCN-209ENST00000546745 1026 ntTSL 3 BASIC7.73□□□□□ -1.17
HMGB1P09429 AL049870.3-201ENST00000555157 360 ntTSL 2 BASIC7.73□□□□□ -1.17
HMGB1P09429 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
HMGB1P09429 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
HMGB1P09429 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
HMGB1P09429 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
HMGB1P09429 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC7.73□□□□□ -1.17
HMGB1P09429 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC7.73□□□□□ -1.17
HMGB1P09429 AC040174.2-201ENST00000602701 465 ntBASIC7.73□□□□□ -1.17
HMGB1P09429 AC012175.1-201ENST00000603755 531 ntBASIC7.73□□□□□ -1.17
HMGB1P09429 AC114477.1-201ENST00000605097 605 ntBASIC7.73□□□□□ -1.17
HMGB1P09429 SNORD96A-201ENST00000606577 79 ntBASIC7.73□□□□□ -1.17
HMGB1P09429 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC7.73□□□□□ -1.17
HMGB1P09429 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC7.73□□□□□ -1.17
HMGB1P09429 AC006453.5-201ENST00000636451 619 ntBASIC7.73□□□□□ -1.17
HMGB1P09429 AC091948.2-201ENST00000636510 279 ntBASIC7.73□□□□□ -1.17
HMGB1P09429 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC7.73□□□□□ -1.17
HMGB1P09429 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC7.73□□□□□ -1.17
HMGB1P09429 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
HMGB1P09429 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
HMGB1P09429 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
HMGB1P09429 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC7.73□□□□□ -1.17
HMGB1P09429 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
HMGB1P09429 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC7.73□□□□□ -1.17
HMGB1P09429 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
HMGB1P09429 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
HMGB1P09429 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
HMGB1P09429 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
HMGB1P09429 DMD-202ENST00000343523 5623 ntTSL 5 BASIC7.72□□□□□ -1.17
HMGB1P09429 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC7.72□□□□□ -1.17
HMGB1P09429 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
HMGB1P09429 RNFT1P3-201ENST00000340898 1052 ntBASIC7.72□□□□□ -1.17
HMGB1P09429 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
HMGB1P09429 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC7.72□□□□□ -1.17
HMGB1P09429 ZNF965P-201ENST00000432501 817 ntBASIC7.72□□□□□ -1.17
HMGB1P09429 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC7.72□□□□□ -1.17
HMGB1P09429 CLIC4P1-201ENST00000453177 535 ntBASIC7.72□□□□□ -1.17
HMGB1P09429 RN7SL267P-201ENST00000485107 261 ntBASIC7.72□□□□□ -1.17
HMGB1P09429 AC107398.1-201ENST00000486904 505 ntBASIC7.72□□□□□ -1.17
HMGB1P09429 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
HMGB1P09429 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC7.72□□□□□ -1.17
HMGB1P09429 IGHV1-14-201ENST00000523391 241 ntBASIC7.72□□□□□ -1.17
HMGB1P09429 AC025419.1-203ENST00000540652 726 ntTSL 3 BASIC7.72□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms