Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 RPL23AP19-201ENST00000436229 369 ntBASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 AC002553.3-201ENST00000453002 341 ntBASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 AC106872.4-201ENST00000510050 523 ntBASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 RNA5SP271-201ENST00000516700 88 ntBASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 IGKV1D-22-201ENST00000518953 324 ntBASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 AC105036.1-201ENST00000566222 271 ntBASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 AC009237.12-201ENST00000604755 742 ntBASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 BX323046.1-201ENST00000610145 535 ntBASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 AC010998.3-201ENST00000613871 631 ntBASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 NEK2P2-201ENST00000438441 1338 ntBASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.22□□□□□ -1.41
TM9SF3Q9HD45 AC105749.1-201ENST00000631338 2008 ntBASIC6.21□□□□□ -1.41
TM9SF3Q9HD45 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC6.21□□□□□ -1.41
TM9SF3Q9HD45 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.41
TM9SF3Q9HD45 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.41
TM9SF3Q9HD45 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.41
TM9SF3Q9HD45 AC011455.2-201ENST00000599320 3336 ntBASIC6.21□□□□□ -1.41
TM9SF3Q9HD45 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 SNORA21-201ENST00000362423 132 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 RNA5SP477-201ENST00000362639 119 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 SNORD8-201ENST00000363915 110 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 SNORA17A-201ENST00000391185 133 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 CBX1P3-201ENST00000413296 527 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 CST12P-201ENST00000457644 362 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 RNU7-157P-201ENST00000459600 66 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 RN7SL165P-201ENST00000477476 291 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 PPIAP19-201ENST00000486414 492 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 CR383658.1-201ENST00000514609 734 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AC022826.1-201ENST00000519383 805 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AP005639.1-201ENST00000526939 192 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AP003396.4-201ENST00000527574 265 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AC068305.2-201ENST00000550567 1205 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 OTX2-203ENST00000554559 715 ntTSL 5 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AC016839.1-201ENST00000578162 867 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AL137246.2-201ENST00000613439 662 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AC245014.3-201ENST00000618589 347 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AL357153.4-201ENST00000620487 1016 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 SNORA17.5-201ENST00000630429 132 ntBASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
TM9SF3Q9HD45 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 AC010624.4-201ENST00000597606 1351 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms