Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RPL35AP31-201ENST00000418340 337 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 AC007562.1-201ENST00000421819 517 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 NAP1L4P3-201ENST00000432820 1147 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 AC007679.3-201ENST00000434035 414 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 SUMO2P8-201ENST00000434672 286 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 TRIM60P16-201ENST00000444048 694 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 AC023274.2-201ENST00000445264 521 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 RPL23AP60-201ENST00000450011 454 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 AC073594.1-201ENST00000462065 364 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 RN7SL170P-201ENST00000487098 295 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 OR5D2P-201ENST00000524390 911 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 AC007346.1-201ENST00000569208 867 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 GLYATL1P2-202ENST00000588046 902 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 AC020916.2-201ENST00000591242 360 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 TEX41-218ENST00000596540 882 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 AP001437.1-201ENST00000608783 456 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 AL512652.1-201ENST00000619006 500 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 AP000550.3-201ENST00000637734 379 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
VPS35Q96QK1 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
VPS35Q96QK1 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
VPS35Q96QK1 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS35Q96QK1 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC6.07□□□□□ -1.44
VPS35Q96QK1 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
VPS35Q96QK1 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS35Q96QK1 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS35Q96QK1 AC140134.1-201ENST00000511830 3544 ntBASIC6.07□□□□□ -1.44
VPS35Q96QK1 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC6.07□□□□□ -1.44
VPS35Q96QK1 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
VPS35Q96QK1 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
VPS35Q96QK1 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
VPS35Q96QK1 LCN1P2-201ENST00000372030 223 ntBASIC6.07□□□□□ -1.44
VPS35Q96QK1 SNORA51.9-201ENST00000384295 124 ntBASIC6.07□□□□□ -1.44
VPS35Q96QK1 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
VPS35Q96QK1 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC6.07□□□□□ -1.44
VPS35Q96QK1 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC6.07□□□□□ -1.44
VPS35Q96QK1 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC6.07□□□□□ -1.44
VPS35Q96QK1 MRPS21P2-201ENST00000424704 264 ntBASIC6.07□□□□□ -1.44
VPS35Q96QK1 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.07□□□□□ -1.44
VPS35Q96QK1 SEPT14P12-201ENST00000442280 560 ntBASIC6.07□□□□□ -1.44
VPS35Q96QK1 RPL6P30-201ENST00000443382 862 ntBASIC6.07□□□□□ -1.44
VPS35Q96QK1 AL512593.1-201ENST00000444758 779 ntBASIC6.07□□□□□ -1.44
VPS35Q96QK1 RN7SKP70-201ENST00000516655 271 ntBASIC6.07□□□□□ -1.44
VPS35Q96QK1 AC011853.1-201ENST00000518911 454 ntBASIC6.07□□□□□ -1.44
VPS35Q96QK1 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS35Q96QK1 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC6.07□□□□□ -1.44
VPS35Q96QK1 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
VPS35Q96QK1 AC090115.2-201ENST00000548060 883 ntBASIC6.07□□□□□ -1.44
VPS35Q96QK1 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC6.07□□□□□ -1.44
VPS35Q96QK1 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS35Q96QK1 STARD6-202ENST00000577499 696 ntTSL 2 BASIC6.07□□□□□ -1.44
VPS35Q96QK1 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS35Q96QK1 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC6.07□□□□□ -1.44
VPS35Q96QK1 AC092681.3-201ENST00000609463 678 ntBASIC6.07□□□□□ -1.44
VPS35Q96QK1 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC6.07□□□□□ -1.44
VPS35Q96QK1 RFPL4AP6-201ENST00000616792 846 ntBASIC6.07□□□□□ -1.44
VPS35Q96QK1 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC6.07□□□□□ -1.44
VPS35Q96QK1 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC6.07□□□□□ -1.44
VPS35Q96QK1 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC6.07□□□□□ -1.44
VPS35Q96QK1 WDR95P-201ENST00000425638 1542 ntBASIC6.07□□□□□ -1.44
VPS35Q96QK1 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
VPS35Q96QK1 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS35Q96QK1 AC024587.1-201ENST00000505925 2157 ntBASIC6.07□□□□□ -1.44
VPS35Q96QK1 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
VPS35Q96QK1 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.07□□□□□ -1.44
VPS35Q96QK1 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
VPS35Q96QK1 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VPS35Q96QK1 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
VPS35Q96QK1 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
VPS35Q96QK1 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VPS35Q96QK1 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
VPS35Q96QK1 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
VPS35Q96QK1 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 RNU1-134P-201ENST00000362935 165 ntBASIC6.06□□□□□ -1.44
VPS35Q96QK1 RNU105B-201ENST00000364478 208 ntBASIC6.06□□□□□ -1.44
VPS35Q96QK1 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VPS35Q96QK1 VN1R12P-201ENST00000403778 876 ntBASIC6.06□□□□□ -1.44
VPS35Q96QK1 RPS17P17-201ENST00000419392 409 ntBASIC6.06□□□□□ -1.44
VPS35Q96QK1 AC117434.1-201ENST00000419971 836 ntBASIC6.06□□□□□ -1.44
VPS35Q96QK1 RPS15AP30-201ENST00000420976 390 ntBASIC6.06□□□□□ -1.44
VPS35Q96QK1 FGF12-202ENST00000430714 603 ntTSL 2 BASIC6.06□□□□□ -1.44
VPS35Q96QK1 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms