Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC091492.1-201ENST00000419844 272 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXA1P49639 LINC01687-203ENST00000420255 897 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HOXA1P49639 AL359633.1-201ENST00000421403 310 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXA1P49639 AP003385.1-201ENST00000426387 893 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 AC009362.1-201ENST00000427253 406 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 AC012485.2-201ENST00000437372 982 ntTSL 5 BASIC5.24□□□□□ -1.57
HOXA1P49639 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXA1P49639 AC114812.2-201ENST00000439336 663 ntTSL 2 BASIC5.24□□□□□ -1.57
HOXA1P49639 AC092421.1-201ENST00000448148 418 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 RPL26P30-201ENST00000453533 435 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXA1P49639 AC015908.1-201ENST00000478739 476 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 RPL5P22-201ENST00000480199 884 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC5.24□□□□□ -1.57
HOXA1P49639 RPS26P24-201ENST00000497656 331 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC5.24□□□□□ -1.57
HOXA1P49639 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HOXA1P49639 SUMO2P4-201ENST00000504193 276 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC5.24□□□□□ -1.57
HOXA1P49639 AC025768.1-201ENST00000510057 267 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC5.24□□□□□ -1.57
HOXA1P49639 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXA1P49639 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXA1P49639 AC084026.1-201ENST00000522028 564 ntTSL 4 BASIC5.24□□□□□ -1.57
HOXA1P49639 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
HOXA1P49639 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.24□□□□□ -1.57
HOXA1P49639 AL445383.1-201ENST00000554689 874 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXA1P49639 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC5.24□□□□□ -1.57
HOXA1P49639 LINC00557-201ENST00000563184 1279 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 MIR378C-201ENST00000578683 81 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 AP006587.6-201ENST00000582128 1091 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC5.24□□□□□ -1.57
HOXA1P49639 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC5.24□□□□□ -1.57
HOXA1P49639 EXOSC3P2-201ENST00000594464 497 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC5.24□□□□□ -1.57
HOXA1P49639 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC5.24□□□□□ -1.57
HOXA1P49639 AC024085.1-201ENST00000604299 432 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC5.24□□□□□ -1.57
HOXA1P49639 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HOXA1P49639 AC006328.2-201ENST00000623198 397 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 AC012005.2-201ENST00000624333 397 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.24□□□□□ -1.57
HOXA1P49639 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.24□□□□□ -1.57
HOXA1P49639 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXA1P49639 AL512283.1-201ENST00000606756 1384 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.24□□□□□ -1.57
HOXA1P49639 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.24□□□□□ -1.57
HOXA1P49639 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXA1P49639 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
HOXA1P49639 AL359955.1-201ENST00000455242 3275 ntBASIC5.24□□□□□ -1.57
HOXA1P49639 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.24□□□□□ -1.57
HOXA1P49639 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA1P49639 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA1P49639 TUBBP10-201ENST00000427668 1301 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA1P49639 AP001002.1-201ENST00000625148 1513 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXA1P49639 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA1P49639 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA1P49639 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA1P49639 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA1P49639 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA1P49639 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA1P49639 TRAV12-3-201ENST00000390442 399 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HOXA1P49639 NPPA-AS1-201ENST00000400892 936 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXA1P49639 RN7SKP161-201ENST00000411110 305 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 AL445213.1-201ENST00000412589 747 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 SETP15-201ENST00000412724 337 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 AC007384.1-202ENST00000417026 891 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA1P49639 MTND2P15-201ENST00000418575 892 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 AC106870.2-201ENST00000421411 691 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXA1P49639 SPATA20P1-201ENST00000423089 438 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXA1P49639 AL606804.1-201ENST00000435333 538 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXA1P49639 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXA1P49639 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXA1P49639 GAPDHP20-201ENST00000444107 1007 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA1P49639 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.23□□□□□ -1.57
HOXA1P49639 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC5.23□□□□□ -1.57
HOXA1P49639 AP000547.1-201ENST00000454360 617 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXA1P49639 RNU7-157P-201ENST00000459600 66 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 RN7SL456P-201ENST00000469290 295 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 AC126615.1-201ENST00000470084 630 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 AC090589.1-201ENST00000473109 362 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 AC025271.1-201ENST00000485045 429 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 HLTF-AS1-201ENST00000492461 415 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXA1P49639 RN7SL776P-201ENST00000493390 268 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXA1P49639 AC114956.3-202ENST00000505645 482 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA1P49639 AL390198.2-201ENST00000510553 222 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.23□□□□□ -1.57
HOXA1P49639 KCTD9P6-201ENST00000522306 950 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 AC008429.2-201ENST00000523057 864 ntBASIC5.23□□□□□ -1.57
HOXA1P49639 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms