Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC7.84□□□□□ -1.15
HOXC9P31274 MYL6P5-201ENST00000412707 459 ntBASIC7.84□□□□□ -1.15
HOXC9P31274 NPM1P4-201ENST00000414095 812 ntBASIC7.84□□□□□ -1.15
HOXC9P31274 AL355433.1-201ENST00000422804 300 ntBASIC7.84□□□□□ -1.15
HOXC9P31274 FMO7P-201ENST00000436045 768 ntBASIC7.84□□□□□ -1.15
HOXC9P31274 AC012075.1-201ENST00000436549 580 ntBASIC7.84□□□□□ -1.15
HOXC9P31274 FABP5P2-201ENST00000439042 408 ntBASIC7.84□□□□□ -1.15
HOXC9P31274 RN7SL515P-201ENST00000463999 297 ntBASIC7.84□□□□□ -1.15
HOXC9P31274 RN7SL799P-201ENST00000475891 298 ntBASIC7.84□□□□□ -1.15
HOXC9P31274 AC099521.1-201ENST00000482557 334 ntBASIC7.84□□□□□ -1.15
HOXC9P31274 RN7SL184P-201ENST00000488308 297 ntBASIC7.84□□□□□ -1.15
HOXC9P31274 AC009120.1-201ENST00000493458 473 ntBASIC7.84□□□□□ -1.15
HOXC9P31274 AC108693.1-201ENST00000496068 432 ntBASIC7.84□□□□□ -1.15
HOXC9P31274 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC7.84□□□□□ -1.15
HOXC9P31274 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC7.84□□□□□ -1.15
HOXC9P31274 OR4A42P-201ENST00000531397 938 ntBASIC7.84□□□□□ -1.15
HOXC9P31274 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC7.84□□□□□ -1.15
HOXC9P31274 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC7.84□□□□□ -1.15
HOXC9P31274 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC7.84□□□□□ -1.15
HOXC9P31274 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC7.84□□□□□ -1.15
HOXC9P31274 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC7.84□□□□□ -1.15
HOXC9P31274 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC7.84□□□□□ -1.15
HOXC9P31274 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
HOXC9P31274 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC7.84□□□□□ -1.15
HOXC9P31274 AC123769.1-201ENST00000530992 3192 ntBASIC7.84□□□□□ -1.15
HOXC9P31274 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
HOXC9P31274 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC7.84□□□□□ -1.16
HOXC9P31274 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC7.84□□□□□ -1.16
HOXC9P31274 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC7.84□□□□□ -1.16
HOXC9P31274 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC7.83□□□□□ -1.16
HOXC9P31274 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
HOXC9P31274 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC7.83□□□□□ -1.16
HOXC9P31274 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
HOXC9P31274 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
HOXC9P31274 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
HOXC9P31274 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC7.83□□□□□ -1.16
HOXC9P31274 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
HOXC9P31274 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC7.83□□□□□ -1.16
HOXC9P31274 AL357752.1-201ENST00000412817 349 ntBASIC7.83□□□□□ -1.16
HOXC9P31274 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC7.83□□□□□ -1.16
HOXC9P31274 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC7.83□□□□□ -1.16
HOXC9P31274 AL663074.2-201ENST00000440621 479 ntBASIC7.83□□□□□ -1.16
HOXC9P31274 AC005297.1-201ENST00000444765 862 ntBASIC7.83□□□□□ -1.16
HOXC9P31274 AL163193.1-201ENST00000444895 788 ntBASIC7.83□□□□□ -1.16
HOXC9P31274 AC026348.1-201ENST00000462549 1053 ntBASIC7.83□□□□□ -1.16
HOXC9P31274 MRE11P1-201ENST00000464884 2127 ntBASIC7.83□□□□□ -1.16
HOXC9P31274 SIAH1P1-201ENST00000479411 923 ntBASIC7.83□□□□□ -1.16
HOXC9P31274 UBA52P7-201ENST00000486088 380 ntBASIC7.83□□□□□ -1.16
HOXC9P31274 OR7E157P-201ENST00000494376 911 ntBASIC7.83□□□□□ -1.16
HOXC9P31274 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC7.83□□□□□ -1.16
HOXC9P31274 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC7.83□□□□□ -1.16
HOXC9P31274 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC7.83□□□□□ -1.16
HOXC9P31274 MINCR-206ENST00000524335 499 ntTSL 2 BASIC7.83□□□□□ -1.16
HOXC9P31274 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC7.83□□□□□ -1.16
HOXC9P31274 AC067852.5-201ENST00000589299 310 ntBASIC7.83□□□□□ -1.16
HOXC9P31274 GMFG-212ENST00000602185 423 ntTSL 3 BASIC7.83□□□□□ -1.16
HOXC9P31274 AC007204.2-201ENST00000615022 616 ntBASIC7.83□□□□□ -1.16
HOXC9P31274 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC7.83□□□□□ -1.16
HOXC9P31274 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC7.83□□□□□ -1.16
HOXC9P31274 USP9YP3-201ENST00000434481 1766 ntBASIC7.83□□□□□ -1.16
HOXC9P31274 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
HOXC9P31274 AC008957.3-201ENST00000624112 2242 ntBASIC7.83□□□□□ -1.16
HOXC9P31274 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
HOXC9P31274 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC7.83□□□□□ -1.16
HOXC9P31274 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
HOXC9P31274 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
HOXC9P31274 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
HOXC9P31274 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC7.83□□□□□ -1.16
HOXC9P31274 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
HOXC9P31274 AC235565.1-201ENST00000456962 1325 ntBASIC7.82□□□□□ -1.16
HOXC9P31274 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC7.82□□□□□ -1.16
HOXC9P31274 LINC02019-201ENST00000608605 2060 ntBASIC7.82□□□□□ -1.16
HOXC9P31274 SRRM1P3-201ENST00000426911 2678 ntBASIC7.82□□□□□ -1.16
HOXC9P31274 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC7.82□□□□□ -1.16
HOXC9P31274 RNU6-673P-201ENST00000365084 104 ntBASIC7.82□□□□□ -1.16
HOXC9P31274 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC7.82□□□□□ -1.16
HOXC9P31274 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC7.82□□□□□ -1.16
HOXC9P31274 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC7.82□□□□□ -1.16
HOXC9P31274 OR2W4P-201ENST00000406496 926 ntBASIC7.82□□□□□ -1.16
HOXC9P31274 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC7.82□□□□□ -1.16
HOXC9P31274 DEFA9P-201ENST00000433042 285 ntBASIC7.82□□□□□ -1.16
HOXC9P31274 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC7.82□□□□□ -1.16
HOXC9P31274 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC7.82□□□□□ -1.16
HOXC9P31274 AL390119.1-201ENST00000440329 312 ntBASIC7.82□□□□□ -1.16
HOXC9P31274 AC011225.1-201ENST00000457751 369 ntBASIC7.82□□□□□ -1.16
HOXC9P31274 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
HOXC9P31274 ACA64.4-201ENST00000459070 127 ntBASIC7.82□□□□□ -1.16
HOXC9P31274 SCARNA6.1-201ENST00000516989 238 ntBASIC7.82□□□□□ -1.16
HOXC9P31274 IGBP1P1-201ENST00000554337 1009 ntBASIC7.82□□□□□ -1.16
HOXC9P31274 AL049872.1-201ENST00000556323 322 ntBASIC7.82□□□□□ -1.16
HOXC9P31274 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC7.82□□□□□ -1.16
HOXC9P31274 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
HOXC9P31274 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC7.82□□□□□ -1.16
HOXC9P31274 SUMO2P15-201ENST00000604285 278 ntBASIC7.82□□□□□ -1.16
HOXC9P31274 AC069234.4-201ENST00000621276 412 ntBASIC7.82□□□□□ -1.16
HOXC9P31274 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC7.82□□□□□ -1.16
HOXC9P31274 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
HOXC9P31274 AC112243.1-201ENST00000623949 3851 ntBASIC7.82□□□□□ -1.16
HOXC9P31274 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC7.82□□□□□ -1.16
HOXC9P31274 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC7.82□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms