Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC6.81□□□□□ -1.32
TRIM39Q9HCM9 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
TRIM39Q9HCM9 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.81□□□□□ -1.32
TRIM39Q9HCM9 DLEU2L-201ENST00000371086 3555 ntBASIC6.81□□□□□ -1.32
TRIM39Q9HCM9 AL512329.1-201ENST00000404600 1592 ntBASIC6.81□□□□□ -1.32
TRIM39Q9HCM9 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC6.81□□□□□ -1.32
TRIM39Q9HCM9 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC6.81□□□□□ -1.32
TRIM39Q9HCM9 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
TRIM39Q9HCM9 AL669831.5-218ENST00000591702 1873 ntBASIC6.81□□□□□ -1.32
TRIM39Q9HCM9 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC6.81□□□□□ -1.32
TRIM39Q9HCM9 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
TRIM39Q9HCM9 AC022075.1-201ENST00000500682 2830 ntTSL 2 BASIC6.81□□□□□ -1.32
TRIM39Q9HCM9 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC6.81□□□□□ -1.32
TRIM39Q9HCM9 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
TRIM39Q9HCM9 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC6.81□□□□□ -1.32
TRIM39Q9HCM9 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 OR7G2-202ENST00000641081 3015 ntAPPRIS ALT2 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 U6.112-201ENST00000384129 70 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 RPL9P21-201ENST00000392269 505 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 MTND4P13-201ENST00000402078 1023 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AL713923.1-201ENST00000414071 378 ntTSL 5 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 RPL18AP14-201ENST00000417685 526 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 RPS6P15-201ENST00000431996 751 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 RPL3P11-201ENST00000434028 1146 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AC000041.1-201ENST00000439655 175 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 ZNF886P-201ENST00000450781 723 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 UOX-201ENST00000471089 899 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AC022730.1-201ENST00000473114 568 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AC079203.1-201ENST00000487972 404 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 MTCYBP19-201ENST00000517463 1124 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AC087672.3-201ENST00000519323 738 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 ACER3-213ENST00000533873 929 ntTSL 2 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 ASB8-215ENST00000540782 659 ntTSL 3 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AL049870.4-201ENST00000555741 486 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AC010287.1-201ENST00000566916 357 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 MIR4789-201ENST00000577469 82 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 MIR4312-201ENST00000579909 76 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AC006262.2-201ENST00000599127 612 ntTSL 3 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AC022001.1-201ENST00000605193 268 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AL121830.1-206ENST00000608476 1254 ntTSL 5 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AL589182.1-201ENST00000611785 320 ntTSL 5 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AC005393.1-201ENST00000617916 584 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AC022079.1-201ENST00000621546 602 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AP002967.1-201ENST00000624203 539 ntBASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC6.8□□□□□ -1.32
TRIM39Q9HCM9 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC6.79□□□□□ -1.32
TRIM39Q9HCM9 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
TRIM39Q9HCM9 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
TRIM39Q9HCM9 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
TRIM39Q9HCM9 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
TRIM39Q9HCM9 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
TRIM39Q9HCM9 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
TRIM39Q9HCM9 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
TRIM39Q9HCM9 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms