Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MGST1-205ENST00000396210 914 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
VPS35Q96QK1 NPM1P37-201ENST00000403105 874 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 TMA16P2-201ENST00000413187 601 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
VPS35Q96QK1 AC079922.1-201ENST00000443291 359 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 PPIAP7-201ENST00000454070 489 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 PRMT5P1-201ENST00000514351 598 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 CR383658.1-201ENST00000514609 734 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 Vault.2-201ENST00000516519 98 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 AC009879.1-201ENST00000520029 839 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 AC021269.1-201ENST00000526860 705 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 AP000620.1-201ENST00000527147 504 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 OR4A40P-201ENST00000533878 948 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
VPS35Q96QK1 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 AC002310.3-201ENST00000569728 723 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 AC141002.1-201ENST00000607025 279 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
VPS35Q96QK1 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
VPS35Q96QK1 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 AC022325.1-201ENST00000502748 2199 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 HSPD1P9-201ENST00000420325 1636 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
VPS35Q96QK1 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
VPS35Q96QK1 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
VPS35Q96QK1 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
VPS35Q96QK1 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
VPS35Q96QK1 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 RNA5SP431-201ENST00000410312 120 ntBASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC116036.1-201ENST00000412199 367 ntBASIC6.09□□□□□ -1.43
VPS35Q96QK1 RPS7P8-201ENST00000418311 581 ntBASIC6.09□□□□□ -1.43
VPS35Q96QK1 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
VPS35Q96QK1 RPL24P2-201ENST00000421023 475 ntBASIC6.09□□□□□ -1.43
VPS35Q96QK1 SETP9-201ENST00000423837 832 ntBASIC6.09□□□□□ -1.43
VPS35Q96QK1 PNKDP1-201ENST00000435914 430 ntBASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 RPL7L1P3-201ENST00000455249 689 ntBASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC009963.3-201ENST00000458090 486 ntBASIC6.09□□□□□ -1.43
VPS35Q96QK1 AL022319.1-201ENST00000458183 1167 ntBASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC006512.2-201ENST00000543250 486 ntBASIC6.09□□□□□ -1.43
VPS35Q96QK1 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC092332.1-201ENST00000563684 829 ntBASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 AL137246.2-201ENST00000613439 662 ntBASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC073592.6-201ENST00000624271 415 ntBASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC073593.1-201ENST00000624500 411 ntBASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC6.09□□□□□ -1.43
VPS35Q96QK1 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.09□□□□□ -1.43
VPS35Q96QK1 AC232271.1-201ENST00000602455 2715 ntBASIC6.09□□□□□ -1.43
VPS35Q96QK1 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.44
VPS35Q96QK1 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
VPS35Q96QK1 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
VPS35Q96QK1 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.09□□□□□ -1.44
VPS35Q96QK1 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC6.09□□□□□ -1.44
VPS35Q96QK1 AC104966.1-201ENST00000467010 1464 ntBASIC6.09□□□□□ -1.44
VPS35Q96QK1 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.09□□□□□ -1.44
VPS35Q96QK1 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 NLRP3P1-201ENST00000622303 1785 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
VPS35Q96QK1 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
VPS35Q96QK1 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 USP40-202ENST00000409945 1946 ntTSL 2 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 AC107977.1-201ENST00000355745 939 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 CRP-204ENST00000368112 787 ntTSL 2 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 U3.23-201ENST00000391132 200 ntBASIC6.08□□□□□ -1.44
VPS35Q96QK1 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC6.08□□□□□ -1.44
VPS35Q96QK1 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms