Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC6.72□□□□□ -1.33
COPB1P53618 RN7SL261P-201ENST00000613441 282 ntBASIC6.72□□□□□ -1.33
COPB1P53618 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC6.72□□□□□ -1.33
COPB1P53618 MIR6503-201ENST00000622884 86 ntBASIC6.72□□□□□ -1.33
COPB1P53618 AC068213.1-201ENST00000625124 226 ntBASIC6.72□□□□□ -1.33
COPB1P53618 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC6.72□□□□□ -1.33
COPB1P53618 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.72□□□□□ -1.33
COPB1P53618 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC6.72□□□□□ -1.33
COPB1P53618 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COPB1P53618 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
COPB1P53618 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC6.72□□□□□ -1.33
COPB1P53618 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.33
COPB1P53618 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.71□□□□□ -1.33
COPB1P53618 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC6.71□□□□□ -1.34
COPB1P53618 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COPB1P53618 ST7-203ENST00000393443 2360 ntTSL 2 BASIC6.71□□□□□ -1.34
COPB1P53618 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.34
COPB1P53618 RNA5SP346-201ENST00000363541 121 ntBASIC6.71□□□□□ -1.34
COPB1P53618 DHFRP5-201ENST00000406944 564 ntBASIC6.71□□□□□ -1.34
COPB1P53618 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.71□□□□□ -1.34
COPB1P53618 FAM183DP-201ENST00000421987 399 ntBASIC6.71□□□□□ -1.34
COPB1P53618 AL356806.1-201ENST00000422524 916 ntBASIC6.71□□□□□ -1.34
COPB1P53618 AC002069.1-201ENST00000429649 1159 ntBASIC6.71□□□□□ -1.34
COPB1P53618 RPL12P16-201ENST00000431098 498 ntBASIC6.71□□□□□ -1.34
COPB1P53618 OR6R1P-201ENST00000431838 940 ntBASIC6.71□□□□□ -1.34
COPB1P53618 NAP1L4P3-201ENST00000432820 1147 ntBASIC6.71□□□□□ -1.34
COPB1P53618 RPS3AP38-201ENST00000435889 763 ntBASIC6.71□□□□□ -1.34
COPB1P53618 NPM1P23-201ENST00000440193 849 ntBASIC6.71□□□□□ -1.34
COPB1P53618 RPL12P49-201ENST00000441100 121 ntBASIC6.71□□□□□ -1.34
COPB1P53618 OR2L9P-201ENST00000444456 913 ntBASIC6.71□□□□□ -1.34
COPB1P53618 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC6.71□□□□□ -1.34
COPB1P53618 AL034369.1-201ENST00000453808 477 ntBASIC6.71□□□□□ -1.34
COPB1P53618 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC6.71□□□□□ -1.34
COPB1P53618 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC6.71□□□□□ -1.34
COPB1P53618 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC6.71□□□□□ -1.34
COPB1P53618 RPL37AP8-201ENST00000494116 276 ntBASIC6.71□□□□□ -1.34
COPB1P53618 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC6.71□□□□□ -1.34
COPB1P53618 KHDC1P1-201ENST00000511053 508 ntBASIC6.71□□□□□ -1.34
COPB1P53618 CCNHP1-201ENST00000513311 678 ntBASIC6.71□□□□□ -1.34
COPB1P53618 ODF1-202ENST00000518835 368 ntTSL 3 BASIC6.71□□□□□ -1.34
COPB1P53618 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC6.71□□□□□ -1.34
COPB1P53618 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC6.71□□□□□ -1.34
COPB1P53618 AL049779.3-201ENST00000557141 606 ntBASIC6.71□□□□□ -1.34
COPB1P53618 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC6.71□□□□□ -1.34
COPB1P53618 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC6.71□□□□□ -1.34
COPB1P53618 AC024267.2-201ENST00000582737 417 ntBASIC6.71□□□□□ -1.34
COPB1P53618 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC6.71□□□□□ -1.34
COPB1P53618 AC008555.7-201ENST00000605008 583 ntBASIC6.71□□□□□ -1.34
COPB1P53618 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC6.71□□□□□ -1.34
COPB1P53618 AC016542.1-201ENST00000608259 493 ntBASIC6.71□□□□□ -1.34
COPB1P53618 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC6.71□□□□□ -1.34
COPB1P53618 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC6.71□□□□□ -1.34
COPB1P53618 AC024651.2-201ENST00000562480 2098 ntBASIC6.71□□□□□ -1.34
COPB1P53618 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COPB1P53618 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
COPB1P53618 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC6.71□□□□□ -1.34
COPB1P53618 AC016583.1-201ENST00000624221 2431 ntBASIC6.71□□□□□ -1.34
COPB1P53618 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
COPB1P53618 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC6.71□□□□□ -1.34
COPB1P53618 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.34
COPB1P53618 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COPB1P53618 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
COPB1P53618 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COPB1P53618 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.71□□□□□ -1.34
COPB1P53618 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC6.71□□□□□ -1.34
COPB1P53618 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.34
COPB1P53618 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COPB1P53618 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC6.71□□□□□ -1.34
COPB1P53618 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC6.71□□□□□ -1.34
COPB1P53618 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COPB1P53618 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COPB1P53618 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COPB1P53618 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.7□□□□□ -1.34
COPB1P53618 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC6.7□□□□□ -1.34
COPB1P53618 AC024341.1-201ENST00000526444 1552 ntBASIC6.7□□□□□ -1.34
COPB1P53618 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
COPB1P53618 TTC41P-205ENST00000551270 3963 ntBASIC6.7□□□□□ -1.34
COPB1P53618 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.7□□□□□ -1.34
COPB1P53618 RNA5SP375-201ENST00000362975 119 ntBASIC6.7□□□□□ -1.34
COPB1P53618 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COPB1P53618 SNORD94-201ENST00000386037 137 ntBASIC6.7□□□□□ -1.34
COPB1P53618 RNU2-72P-201ENST00000411175 163 ntBASIC6.7□□□□□ -1.34
COPB1P53618 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC6.7□□□□□ -1.34
COPB1P53618 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COPB1P53618 GPN3P1-201ENST00000423883 535 ntBASIC6.7□□□□□ -1.34
COPB1P53618 OSTCP4-201ENST00000424397 449 ntBASIC6.7□□□□□ -1.34
COPB1P53618 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COPB1P53618 AC106901.1-201ENST00000425086 698 ntBASIC6.7□□□□□ -1.34
COPB1P53618 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC6.7□□□□□ -1.34
COPB1P53618 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
COPB1P53618 AL512593.1-201ENST00000444758 779 ntBASIC6.7□□□□□ -1.34
COPB1P53618 RAD1P2-201ENST00000446414 663 ntBASIC6.7□□□□□ -1.34
COPB1P53618 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC6.7□□□□□ -1.34
COPB1P53618 RPL23AP60-201ENST00000450011 454 ntBASIC6.7□□□□□ -1.34
COPB1P53618 AL445991.1-201ENST00000450381 475 ntBASIC6.7□□□□□ -1.34
COPB1P53618 AC004890.1-201ENST00000461005 181 ntBASIC6.7□□□□□ -1.34
COPB1P53618 AC124945.1-201ENST00000485133 188 ntBASIC6.7□□□□□ -1.34
COPB1P53618 AC113398.2-201ENST00000507630 558 ntBASIC6.7□□□□□ -1.34
COPB1P53618 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC6.7□□□□□ -1.34
COPB1P53618 AC135983.3-201ENST00000528049 1226 ntBASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 162.9 ms