Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.43□□□□□ -1.38
LHX1P48742 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
LHX1P48742 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.43□□□□□ -1.38
LHX1P48742 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.43□□□□□ -1.38
LHX1P48742 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
LHX1P48742 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
LHX1P48742 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.43□□□□□ -1.38
LHX1P48742 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC6.42□□□□□ -1.38
LHX1P48742 AC016583.1-201ENST00000624221 2431 ntBASIC6.42□□□□□ -1.38
LHX1P48742 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC6.42□□□□□ -1.38
LHX1P48742 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
LHX1P48742 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
LHX1P48742 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC6.42□□□□□ -1.38
LHX1P48742 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
LHX1P48742 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
LHX1P48742 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
LHX1P48742 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
LHX1P48742 OR10R3P-201ENST00000361688 942 ntBASIC6.42□□□□□ -1.38
LHX1P48742 RNA5SP273-201ENST00000362484 113 ntBASIC6.42□□□□□ -1.38
LHX1P48742 RN7SKP15-201ENST00000364742 309 ntBASIC6.42□□□□□ -1.38
LHX1P48742 AL096711.1-201ENST00000404780 554 ntBASIC6.42□□□□□ -1.38
LHX1P48742 RN7SKP166-201ENST00000410812 305 ntBASIC6.42□□□□□ -1.38
LHX1P48742 HMGN1P20-201ENST00000411849 300 ntBASIC6.42□□□□□ -1.38
LHX1P48742 RPL35AP3-201ENST00000414680 288 ntBASIC6.42□□□□□ -1.38
LHX1P48742 VN1R3-201ENST00000418822 919 ntBASIC6.42□□□□□ -1.38
LHX1P48742 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.42□□□□□ -1.38
LHX1P48742 AC144530.1-201ENST00000452862 555 ntBASIC6.42□□□□□ -1.38
LHX1P48742 RPL5P12-201ENST00000477071 851 ntBASIC6.42□□□□□ -1.38
LHX1P48742 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC6.42□□□□□ -1.38
LHX1P48742 RN7SL193P-201ENST00000491708 276 ntBASIC6.42□□□□□ -1.38
LHX1P48742 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC6.42□□□□□ -1.38
LHX1P48742 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC6.42□□□□□ -1.38
LHX1P48742 WBP1LP3-201ENST00000523033 208 ntBASIC6.42□□□□□ -1.38
LHX1P48742 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC6.42□□□□□ -1.38
LHX1P48742 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC6.42□□□□□ -1.38
LHX1P48742 AC027334.1-201ENST00000603257 310 ntBASIC6.42□□□□□ -1.38
LHX1P48742 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
LHX1P48742 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
LHX1P48742 AC016251.2-201ENST00000623393 3089 ntBASIC6.42□□□□□ -1.38
LHX1P48742 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC6.42□□□□□ -1.38
LHX1P48742 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
LHX1P48742 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC6.42□□□□□ -1.38
LHX1P48742 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC6.42□□□□□ -1.38
LHX1P48742 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.42□□□□□ -1.38
LHX1P48742 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.42□□□□□ -1.38
LHX1P48742 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
LHX1P48742 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
LHX1P48742 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
LHX1P48742 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 AC022034.1-201ENST00000512867 2156 ntBASIC6.41□□□□□ -1.38
LHX1P48742 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 AC079753.1-201ENST00000623243 3868 ntBASIC6.41□□□□□ -1.38
LHX1P48742 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.41□□□□□ -1.38
LHX1P48742 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
LHX1P48742 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 AF287957.1-201ENST00000607368 1595 ntBASIC6.41□□□□□ -1.38
LHX1P48742 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC6.41□□□□□ -1.38
LHX1P48742 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC6.41□□□□□ -1.38
LHX1P48742 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC6.41□□□□□ -1.38
LHX1P48742 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC6.41□□□□□ -1.38
LHX1P48742 RPL36P18-201ENST00000419316 318 ntBASIC6.41□□□□□ -1.38
LHX1P48742 NMD3P2-201ENST00000421815 761 ntBASIC6.41□□□□□ -1.38
LHX1P48742 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.41□□□□□ -1.38
LHX1P48742 VN1R96P-201ENST00000446052 858 ntBASIC6.41□□□□□ -1.38
LHX1P48742 GEMIN2P1-201ENST00000454246 752 ntBASIC6.41□□□□□ -1.38
LHX1P48742 ACA64.1-201ENST00000459171 127 ntBASIC6.41□□□□□ -1.38
LHX1P48742 RN7SL269P-201ENST00000467795 305 ntBASIC6.41□□□□□ -1.38
LHX1P48742 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC6.41□□□□□ -1.38
LHX1P48742 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC6.41□□□□□ -1.38
LHX1P48742 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 Y_RNA.667-201ENST00000516212 107 ntBASIC6.41□□□□□ -1.38
LHX1P48742 RNU6-964P-201ENST00000516524 69 ntBASIC6.41□□□□□ -1.38
LHX1P48742 RNA5SP438-201ENST00000516561 112 ntBASIC6.41□□□□□ -1.38
LHX1P48742 AP004609.2-201ENST00000532177 190 ntBASIC6.41□□□□□ -1.38
LHX1P48742 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.41□□□□□ -1.38
LHX1P48742 AC090651.1-201ENST00000567865 634 ntBASIC6.41□□□□□ -1.38
LHX1P48742 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
LHX1P48742 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
LHX1P48742 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC6.41□□□□□ -1.38
LHX1P48742 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
LHX1P48742 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.41□□□□□ -1.38
LHX1P48742 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 AC008957.3-201ENST00000624112 2242 ntBASIC6.41□□□□□ -1.38
LHX1P48742 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
LHX1P48742 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
LHX1P48742 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.41□□□□□ -1.38
LHX1P48742 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
LHX1P48742 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
LHX1P48742 OLMALINC-203ENST00000641087 3779 ntBASIC6.4□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms