Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC103591.2-201ENST00000265259 766 ntBASIC9.77□□□□□ -0.85
CUX1P39880 AC009804.1-201ENST00000400949 179 ntBASIC9.77□□□□□ -0.85
CUX1P39880 AL109941.1-201ENST00000401925 229 ntBASIC9.77□□□□□ -0.85
CUX1P39880 AC005033.1-201ENST00000428904 813 ntBASIC9.77□□□□□ -0.85
CUX1P39880 RPS27P18-201ENST00000431701 247 ntBASIC9.77□□□□□ -0.85
CUX1P39880 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC9.77□□□□□ -0.85
CUX1P39880 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC9.77□□□□□ -0.85
CUX1P39880 AC091685.2-201ENST00000454924 864 ntBASIC9.77□□□□□ -0.85
CUX1P39880 PGAM1P13-201ENST00000507497 754 ntBASIC9.77□□□□□ -0.85
CUX1P39880 CDC42P3-201ENST00000518493 633 ntBASIC9.77□□□□□ -0.85
CUX1P39880 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC9.77□□□□□ -0.85
CUX1P39880 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC9.77□□□□□ -0.85
CUX1P39880 RBM22P12-201ENST00000567098 1255 ntBASIC9.77□□□□□ -0.85
CUX1P39880 RN7SL708P-201ENST00000580952 299 ntBASIC9.77□□□□□ -0.85
CUX1P39880 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC9.77□□□□□ -0.85
CUX1P39880 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC9.76□□□□□ -0.85
CUX1P39880 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC9.76□□□□□ -0.85
CUX1P39880 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC9.76□□□□□ -0.85
CUX1P39880 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC9.76□□□□□ -0.85
CUX1P39880 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC9.76□□□□□ -0.85
CUX1P39880 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC9.76□□□□□ -0.85
CUX1P39880 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC9.76□□□□□ -0.85
CUX1P39880 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
CUX1P39880 AL161912.4-201ENST00000623889 2468 ntBASIC9.76□□□□□ -0.85
CUX1P39880 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC9.76□□□□□ -0.85
CUX1P39880 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC9.76□□□□□ -0.85
CUX1P39880 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
CUX1P39880 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC9.76□□□□□ -0.85
CUX1P39880 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC9.76□□□□□ -0.85
CUX1P39880 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC9.76□□□□□ -0.85
CUX1P39880 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC9.76□□□□□ -0.85
CUX1P39880 AL022319.1-201ENST00000458183 1167 ntBASIC9.76□□□□□ -0.85
CUX1P39880 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC9.76□□□□□ -0.85
CUX1P39880 AC073581.1-201ENST00000519036 575 ntBASIC9.76□□□□□ -0.85
CUX1P39880 ASB8-202ENST00000535055 657 ntTSL 2 BASIC9.76□□□□□ -0.85
CUX1P39880 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC9.76□□□□□ -0.85
CUX1P39880 AP002884.5-201ENST00000595053 1132 ntBASIC9.76□□□□□ -0.85
CUX1P39880 AL391261.1-201ENST00000555712 1479 ntBASIC9.76□□□□□ -0.85
CUX1P39880 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
CUX1P39880 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC9.76□□□□□ -0.85
CUX1P39880 XIST-206ENST00000434839 2865 ntTSL 5 BASIC9.76□□□□□ -0.85
CUX1P39880 LYRM4-201ENST00000330636 7312 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
CUX1P39880 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
CUX1P39880 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
CUX1P39880 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
CUX1P39880 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC9.75□□□□□ -0.85
CUX1P39880 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
CUX1P39880 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
CUX1P39880 AC005618.1-201ENST00000606901 3148 ntBASIC9.75□□□□□ -0.85
CUX1P39880 CTAGE11P-201ENST00000451540 2353 ntBASIC9.75□□□□□ -0.85
CUX1P39880 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC9.75□□□□□ -0.85
CUX1P39880 RPS23P1-201ENST00000491662 432 ntBASIC9.75□□□□□ -0.85
CUX1P39880 CCDC11P1-201ENST00000503137 1162 ntBASIC9.75□□□□□ -0.85
CUX1P39880 NDUFB5P1-201ENST00000508134 564 ntBASIC9.75□□□□□ -0.85
CUX1P39880 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC9.75□□□□□ -0.85
CUX1P39880 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC9.75□□□□□ -0.85
CUX1P39880 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC9.75□□□□□ -0.85
CUX1P39880 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC9.75□□□□□ -0.85
CUX1P39880 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC9.75□□□□□ -0.85
CUX1P39880 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC9.75□□□□□ -0.85
CUX1P39880 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC9.75□□□□□ -0.85
CUX1P39880 AL390318.1-201ENST00000624564 687 ntBASIC9.75□□□□□ -0.85
CUX1P39880 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC9.75□□□□□ -0.85
CUX1P39880 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC9.75□□□□□ -0.85
CUX1P39880 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC9.75□□□□□ -0.85
CUX1P39880 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC9.75□□□□□ -0.85
CUX1P39880 CDY5P-201ENST00000411487 1580 ntBASIC9.75□□□□□ -0.85
CUX1P39880 CDY9P-201ENST00000451397 1580 ntBASIC9.75□□□□□ -0.85
CUX1P39880 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC9.75□□□□□ -0.85
CUX1P39880 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
CUX1P39880 PRLR-212ENST00000513753 1525 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
CUX1P39880 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC9.74□□□□□ -0.85
CUX1P39880 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
CUX1P39880 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
CUX1P39880 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
CUX1P39880 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC9.74□□□□□ -0.85
CUX1P39880 RNA5SP339-201ENST00000390987 122 ntBASIC9.74□□□□□ -0.85
CUX1P39880 AL162739.1-201ENST00000450606 307 ntBASIC9.74□□□□□ -0.85
CUX1P39880 AP000547.1-201ENST00000454360 617 ntBASIC9.74□□□□□ -0.85
CUX1P39880 OR2AO1P-201ENST00000476497 403 ntBASIC9.74□□□□□ -0.85
CUX1P39880 RPL23AP40-201ENST00000487630 390 ntBASIC9.74□□□□□ -0.85
CUX1P39880 OR5D15P-201ENST00000531671 942 ntBASIC9.74□□□□□ -0.85
CUX1P39880 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC9.74□□□□□ -0.85
CUX1P39880 CRYBG3-201ENST00000389622 10729 ntAPPRIS P1 TSL 5 BASIC9.74□□□□□ -0.85
CUX1P39880 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
CUX1P39880 TANK-205ENST00000405852 2155 ntTSL 5 BASIC9.74□□□□□ -0.85
CUX1P39880 AC007938.2-201ENST00000604666 2634 ntBASIC9.74□□□□□ -0.85
CUX1P39880 MRRFP1-201ENST00000435941 1675 ntBASIC9.74□□□□□ -0.85
CUX1P39880 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
CUX1P39880 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
CUX1P39880 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC9.74□□□□□ -0.85
CUX1P39880 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
CUX1P39880 EEF1A1P30-201ENST00000429708 1315 ntBASIC9.73□□□□□ -0.85
CUX1P39880 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC9.73□□□□□ -0.85
CUX1P39880 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
CUX1P39880 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC9.73□□□□□ -0.85
CUX1P39880 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
CUX1P39880 MIR130A-201ENST00000385274 89 ntBASIC9.73□□□□□ -0.85
CUX1P39880 HMGA1P8-201ENST00000414130 321 ntBASIC9.73□□□□□ -0.85
CUX1P39880 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC9.73□□□□□ -0.85
Retrieved 100 of 98,524 protein–RNA pairs in 164.9 ms