Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC7.62□□□□□ -1.19
COL18A1P39060 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
COL18A1P39060 IARS-213ENST00000627121 4587 ntTSL 5 BASIC7.62□□□□□ -1.19
COL18A1P39060 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL18A1P39060 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC7.62□□□□□ -1.19
COL18A1P39060 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC7.62□□□□□ -1.19
COL18A1P39060 USP9YP3-201ENST00000434481 1766 ntBASIC7.62□□□□□ -1.19
COL18A1P39060 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 AC008957.3-201ENST00000624112 2242 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC7.61□□□□□ -1.19
COL18A1P39060 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 RNA5SP335-201ENST00000363817 110 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 MIR223-201ENST00000385204 110 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 AC009804.1-201ENST00000400949 179 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 AC011742.2-201ENST00000443818 352 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC7.61□□□□□ -1.19
COL18A1P39060 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC7.61□□□□□ -1.19
COL18A1P39060 TPM3P3-201ENST00000521343 354 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 AC132068.1-201ENST00000623805 459 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC7.61□□□□□ -1.19
COL18A1P39060 AL139805.2-201ENST00000455305 2433 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 ZNF658B-201ENST00000602828 3408 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 TNC-202ENST00000350763 7641 ntAPPRIS P2 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 ABCC2-202ENST00000370449 5312 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 AL079307.1-201ENST00000553312 5982 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 ARNT2-207ENST00000533983 6690 ntAPPRIS ALT1 TSL 5 BASIC7.61□□□□□ -1.19
COL18A1P39060 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 AC023421.1-201ENST00000590535 1785 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 DGKK-201ENST00000611977 7407 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 KIAA1671-206ENST00000637069 6510 ntAPPRIS ALT2 TSL 5 BASIC7.61□□□□□ -1.19
COL18A1P39060 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC7.61□□□□□ -1.19
COL18A1P39060 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC7.61□□□□□ -1.19
COL18A1P39060 RNA5SP333-201ENST00000363466 118 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 RNA5SP334-201ENST00000364825 118 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC7.61□□□□□ -1.19
COL18A1P39060 MIR550A3-201ENST00000390735 95 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC7.61□□□□□ -1.19
COL18A1P39060 AC096775.1-201ENST00000437724 448 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 AC099521.1-201ENST00000482557 334 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 SETP3-201ENST00000581726 813 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 AC011497.2-201ENST00000600255 639 ntBASIC7.61□□□□□ -1.19
COL18A1P39060 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC7.61□□□□□ -1.19
COL18A1P39060 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC7.61□□□□□ -1.19
COL18A1P39060 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
COL18A1P39060 TMEM75-201ENST00000624314 2165 ntBASIC7.6□□□□□ -1.19
COL18A1P39060 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
COL18A1P39060 SNHG14-226ENST00000640631 13074 ntTSL 5 BASIC7.6□□□□□ -1.19
COL18A1P39060 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC7.6□□□□□ -1.19
COL18A1P39060 ATP2B4-203ENST00000357681 8968 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
COL18A1P39060 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
COL18A1P39060 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC7.6□□□□□ -1.19
COL18A1P39060 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
COL18A1P39060 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC7.6□□□□□ -1.19
COL18A1P39060 RBPJ-201ENST00000342295 5860 ntTSL 5 BASIC7.6□□□□□ -1.19
COL18A1P39060 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
COL18A1P39060 AC112243.1-201ENST00000623949 3851 ntBASIC7.6□□□□□ -1.19
COL18A1P39060 AL034549.2-201ENST00000618285 3373 ntBASIC7.6□□□□□ -1.19
COL18A1P39060 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC7.6□□□□□ -1.19
COL18A1P39060 SPHKAP-202ENST00000392056 6917 ntAPPRIS ALT2 TSL 1 (best) BASIC7.6□□□□□ -1.19
COL18A1P39060 DRP2-202ENST00000395209 7277 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
COL18A1P39060 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
COL18A1P39060 RPL7L1P9-201ENST00000431298 745 ntBASIC7.6□□□□□ -1.19
COL18A1P39060 AC092106.1-201ENST00000444291 373 ntBASIC7.6□□□□□ -1.19
COL18A1P39060 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC7.6□□□□□ -1.19
COL18A1P39060 AC090638.1-201ENST00000498296 909 ntBASIC7.6□□□□□ -1.19
COL18A1P39060 AC105384.2-201ENST00000508433 640 ntBASIC7.6□□□□□ -1.19
COL18A1P39060 AC106730.2-201ENST00000566641 540 ntBASIC7.6□□□□□ -1.19
COL18A1P39060 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC7.6□□□□□ -1.19
COL18A1P39060 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC7.6□□□□□ -1.19
COL18A1P39060 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
COL18A1P39060 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC7.6□□□□□ -1.19
COL18A1P39060 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC7.6□□□□□ -1.19
COL18A1P39060 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
COL18A1P39060 AL391262.1-201ENST00000556558 1992 ntBASIC7.6□□□□□ -1.19
COL18A1P39060 MRRFP1-201ENST00000435941 1675 ntBASIC7.59□□□□□ -1.19
COL18A1P39060 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL18A1P39060 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL18A1P39060 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC7.59□□□□□ -1.19
COL18A1P39060 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC7.59□□□□□ -1.19
COL18A1P39060 GAPDHP24-201ENST00000328713 983 ntBASIC7.59□□□□□ -1.19
COL18A1P39060 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
COL18A1P39060 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC7.59□□□□□ -1.19
COL18A1P39060 SLC35E1P1-201ENST00000419313 864 ntBASIC7.59□□□□□ -1.19
COL18A1P39060 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC7.59□□□□□ -1.19
COL18A1P39060 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC7.59□□□□□ -1.19
COL18A1P39060 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC7.59□□□□□ -1.19
COL18A1P39060 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC7.59□□□□□ -1.19
COL18A1P39060 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC7.59□□□□□ -1.19
COL18A1P39060 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC7.59□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms