Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC7.77□□□□□ -1.16
HMGB1P09429 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC7.77□□□□□ -1.16
HMGB1P09429 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.16
HMGB1P09429 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC7.77□□□□□ -1.16
HMGB1P09429 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC7.77□□□□□ -1.16
HMGB1P09429 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
HMGB1P09429 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC7.77□□□□□ -1.17
HMGB1P09429 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
HMGB1P09429 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
HMGB1P09429 EEF1A1P24-201ENST00000451469 1378 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
HMGB1P09429 DOCK11P1-201ENST00000553480 5932 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC7.77□□□□□ -1.17
HMGB1P09429 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
HMGB1P09429 RN7SKP118-201ENST00000364331 330 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
HMGB1P09429 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
HMGB1P09429 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC7.77□□□□□ -1.17
HMGB1P09429 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC7.77□□□□□ -1.17
HMGB1P09429 BX119321.1-201ENST00000428912 797 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 NPM1P18-201ENST00000434232 732 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 AC003989.1-201ENST00000434569 565 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC7.77□□□□□ -1.17
HMGB1P09429 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
HMGB1P09429 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC7.77□□□□□ -1.17
HMGB1P09429 MTCO3P43-201ENST00000440974 771 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 BMS1P11-201ENST00000442351 885 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 AC097463.1-201ENST00000447288 481 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
HMGB1P09429 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC7.77□□□□□ -1.17
HMGB1P09429 BMS1P9-201ENST00000457640 885 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC7.77□□□□□ -1.17
HMGB1P09429 RPS3AP49-201ENST00000472161 790 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC7.77□□□□□ -1.17
HMGB1P09429 AC094105.1-201ENST00000509745 560 ntTSL 4 BASIC7.77□□□□□ -1.17
HMGB1P09429 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC7.77□□□□□ -1.17
HMGB1P09429 AC087272.1-201ENST00000523624 533 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 KCTD9P4-201ENST00000526766 1166 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC7.77□□□□□ -1.17
HMGB1P09429 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
HMGB1P09429 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC7.77□□□□□ -1.17
HMGB1P09429 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC7.77□□□□□ -1.17
HMGB1P09429 AC021483.2-201ENST00000567415 758 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC7.77□□□□□ -1.17
HMGB1P09429 RN7SL208P-201ENST00000577964 296 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC7.77□□□□□ -1.17
HMGB1P09429 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC7.77□□□□□ -1.17
HMGB1P09429 AL096803.3-201ENST00000609032 532 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 RAB28P4-201ENST00000622233 665 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
HMGB1P09429 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
HMGB1P09429 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC7.77□□□□□ -1.17
HMGB1P09429 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
HMGB1P09429 AC005034.3-201ENST00000604845 1747 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC7.77□□□□□ -1.17
HMGB1P09429 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC7.77□□□□□ -1.17
HMGB1P09429 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
HMGB1P09429 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC7.77□□□□□ -1.17
HMGB1P09429 TTC41P-205ENST00000551270 3963 ntBASIC7.77□□□□□ -1.17
HMGB1P09429 AL353796.1-201ENST00000561542 3241 ntBASIC7.76□□□□□ -1.17
HMGB1P09429 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC7.76□□□□□ -1.17
HMGB1P09429 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC7.76□□□□□ -1.17
HMGB1P09429 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
HMGB1P09429 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC7.76□□□□□ -1.17
HMGB1P09429 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC7.76□□□□□ -1.17
HMGB1P09429 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC7.76□□□□□ -1.17
HMGB1P09429 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 PPIAP24-201ENST00000328558 471 ntBASIC7.76□□□□□ -1.17
HMGB1P09429 SEC61G-201ENST00000352861 462 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 RNA5SP140-201ENST00000364524 92 ntBASIC7.76□□□□□ -1.17
HMGB1P09429 MRPS6P2-201ENST00000381143 370 ntBASIC7.76□□□□□ -1.17
HMGB1P09429 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC7.76□□□□□ -1.17
HMGB1P09429 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC7.76□□□□□ -1.17
HMGB1P09429 CDC42P6-201ENST00000421246 576 ntBASIC7.76□□□□□ -1.17
HMGB1P09429 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
HMGB1P09429 AL596268.1-201ENST00000427910 1048 ntBASIC7.76□□□□□ -1.17
HMGB1P09429 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC7.76□□□□□ -1.17
HMGB1P09429 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC7.76□□□□□ -1.17
HMGB1P09429 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC7.76□□□□□ -1.17
HMGB1P09429 AC084337.1-201ENST00000524809 686 ntBASIC7.76□□□□□ -1.17
HMGB1P09429 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC7.76□□□□□ -1.17
HMGB1P09429 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC7.76□□□□□ -1.17
HMGB1P09429 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC7.76□□□□□ -1.17
HMGB1P09429 CKS1BP1-201ENST00000555221 240 ntBASIC7.76□□□□□ -1.17
HMGB1P09429 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 NPM1P47-201ENST00000560843 856 ntBASIC7.76□□□□□ -1.17
HMGB1P09429 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC7.76□□□□□ -1.17
HMGB1P09429 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC7.76□□□□□ -1.17
HMGB1P09429 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC7.76□□□□□ -1.17
HMGB1P09429 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC7.76□□□□□ -1.17
HMGB1P09429 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC7.76□□□□□ -1.17
HMGB1P09429 AC116165.3-201ENST00000614524 400 ntBASIC7.76□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms