Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXD4P09016 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXD4P09016 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXD4P09016 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
HOXD4P09016 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
HOXD4P09016 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXD4P09016 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXD4P09016 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.69□□□□□ -1.5
HOXD4P09016 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXD4P09016 LYARP1-201ENST00000436977 1501 ntBASIC5.69□□□□□ -1.5
HOXD4P09016 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
HOXD4P09016 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXD4P09016 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXD4P09016 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.69□□□□□ -1.5
HOXD4P09016 AL136984.1-201ENST00000607611 1893 ntBASIC5.69□□□□□ -1.5
HOXD4P09016 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
HOXD4P09016 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXD4P09016 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
HOXD4P09016 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXD4P09016 AC023490.2-201ENST00000359859 470 ntBASIC5.69□□□□□ -1.5
HOXD4P09016 PEX12P1-201ENST00000400284 1048 ntBASIC5.69□□□□□ -1.5
HOXD4P09016 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXD4P09016 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXD4P09016 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXD4P09016 AC112492.2-201ENST00000432774 1030 ntBASIC5.69□□□□□ -1.5
HOXD4P09016 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC5.69□□□□□ -1.5
HOXD4P09016 RN7SL369P-201ENST00000477138 299 ntBASIC5.69□□□□□ -1.5
HOXD4P09016 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXD4P09016 AC104109.1-201ENST00000498563 436 ntBASIC5.69□□□□□ -1.5
HOXD4P09016 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXD4P09016 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.69□□□□□ -1.5
HOXD4P09016 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXD4P09016 ASB8-203ENST00000535988 679 ntTSL 2 BASIC5.69□□□□□ -1.5
HOXD4P09016 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXD4P09016 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXD4P09016 AC092332.1-201ENST00000563684 829 ntBASIC5.69□□□□□ -1.5
HOXD4P09016 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
HOXD4P09016 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC5.69□□□□□ -1.5
HOXD4P09016 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXD4P09016 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXD4P09016 AL157899.1-201ENST00000604110 936 ntBASIC5.69□□□□□ -1.5
HOXD4P09016 AC073046.2-201ENST00000604756 527 ntBASIC5.69□□□□□ -1.5
HOXD4P09016 LSM1P2-201ENST00000604911 322 ntBASIC5.69□□□□□ -1.5
HOXD4P09016 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXD4P09016 RPSAP75-201ENST00000605848 301 ntBASIC5.69□□□□□ -1.5
HOXD4P09016 AC092681.3-201ENST00000609463 678 ntBASIC5.69□□□□□ -1.5
HOXD4P09016 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HOXD4P09016 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXD4P09016 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXD4P09016 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXD4P09016 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HOXD4P09016 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXD4P09016 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXD4P09016 CASC19-260ENST00000641828 2001 ntBASIC5.69□□□□□ -1.5
HOXD4P09016 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HOXD4P09016 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXD4P09016 AC093225.1-201ENST00000506867 1408 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXD4P09016 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.68□□□□□ -1.5
HOXD4P09016 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXD4P09016 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.68□□□□□ -1.5
HOXD4P09016 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
HOXD4P09016 AL157702.1-201ENST00000398764 426 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXD4P09016 RN7SKP206-201ENST00000410823 293 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 HMGN1P20-201ENST00000411849 300 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 RPL12P16-201ENST00000431098 498 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXD4P09016 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXD4P09016 RBMY2AP-201ENST00000445405 1157 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 RBMY2CP-201ENST00000448575 1157 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 RBMY2DP-202ENST00000448881 1157 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 RBMY2BP-202ENST00000451071 1156 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 SETP20-201ENST00000457046 852 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 RPL23AP64-201ENST00000469465 435 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXD4P09016 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXD4P09016 OR4D12P-201ENST00000509361 911 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXD4P09016 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXD4P09016 TRIM77BP-201ENST00000524985 1119 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC5.68□□□□□ -1.5
HOXD4P09016 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXD4P09016 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HOXD4P09016 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC5.68□□□□□ -1.5
HOXD4P09016 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC5.68□□□□□ -1.5
HOXD4P09016 MIR4701-201ENST00000583094 63 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 OR7A11P-201ENST00000597719 953 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 AL359704.2-201ENST00000604335 521 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 AL080312.2-201ENST00000613001 630 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 AC129778.1-202ENST00000623812 261 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 SNX18P12-201ENST00000624821 759 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXD4P09016 AL591379.1-207ENST00000635982 261 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 AMYH02020865.1-205ENST00000636189 261 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXD4P09016 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXD4P09016 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXD4P09016 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms