Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 SDHCP4-201ENST00000532834 510 ntBASIC7.8□□□□□ -1.16
USB1Q9BQ65 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC7.8□□□□□ -1.16
USB1Q9BQ65 AP002892.2-201ENST00000544195 560 ntTSL 4 BASIC7.8□□□□□ -1.16
USB1Q9BQ65 AC002375.1-201ENST00000551161 581 ntTSL 3 BASIC7.8□□□□□ -1.16
USB1Q9BQ65 DNAJC8P1-201ENST00000554535 372 ntBASIC7.8□□□□□ -1.16
USB1Q9BQ65 AC110588.1-201ENST00000559699 137 ntBASIC7.8□□□□□ -1.16
USB1Q9BQ65 AC126323.1-201ENST00000561706 611 ntTSL 3 BASIC7.8□□□□□ -1.16
USB1Q9BQ65 AC137800.1-202ENST00000562098 446 ntBASIC7.8□□□□□ -1.16
USB1Q9BQ65 AC093249.3-201ENST00000562444 424 ntBASIC7.8□□□□□ -1.16
USB1Q9BQ65 AL049634.2-203ENST00000564763 588 ntAPPRIS ALT2 TSL 4 BASIC7.8□□□□□ -1.16
USB1Q9BQ65 AC012186.1-201ENST00000566702 398 ntBASIC7.8□□□□□ -1.16
USB1Q9BQ65 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC7.8□□□□□ -1.16
USB1Q9BQ65 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC7.8□□□□□ -1.16
USB1Q9BQ65 HMGN1P30-201ENST00000589286 268 ntBASIC7.8□□□□□ -1.16
USB1Q9BQ65 LINC01515-207ENST00000598092 496 ntTSL 3 BASIC7.8□□□□□ -1.16
USB1Q9BQ65 AL451049.1-201ENST00000608672 497 ntBASIC7.8□□□□□ -1.16
USB1Q9BQ65 DISC2.1-201ENST00000612827 205 ntBASIC7.8□□□□□ -1.16
USB1Q9BQ65 BSNDP3-201ENST00000617487 364 ntBASIC7.8□□□□□ -1.16
USB1Q9BQ65 AC009248.2-201ENST00000619826 254 ntBASIC7.8□□□□□ -1.16
USB1Q9BQ65 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC7.8□□□□□ -1.16
USB1Q9BQ65 ZNF320-201ENST00000391781 6074 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
USB1Q9BQ65 GAB3-202ENST00000369575 4718 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
USB1Q9BQ65 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
USB1Q9BQ65 NUDT4-206ENST00000549992 3607 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
USB1Q9BQ65 SKAP2-201ENST00000345317 3998 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
USB1Q9BQ65 LINC01788-201ENST00000419450 2086 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
USB1Q9BQ65 USP40-203ENST00000427112 3744 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
USB1Q9BQ65 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC7.8□□□□□ -1.16
USB1Q9BQ65 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
USB1Q9BQ65 TMEM136-204ENST00000529187 3930 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
USB1Q9BQ65 DEPDC1B-202ENST00000453022 1569 ntTSL 2 BASIC7.8□□□□□ -1.16
USB1Q9BQ65 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
USB1Q9BQ65 MAP7D3-204ENST00000370663 4446 ntAPPRIS ALT2 TSL 2 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 MTRR-201ENST00000264668 3274 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
USB1Q9BQ65 USP3-201ENST00000268049 5311 ntTSL 5 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 AC012467.2-201ENST00000607783 2583 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 RPAP1-202ENST00000561603 3906 ntTSL 5 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 RASSF6-203ENST00000342081 4331 ntAPPRIS P4 TSL 2 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 ACLY-207ENST00000590151 4309 ntAPPRIS P4 TSL 1 (best) BASIC7.79□□□□□ -1.16
USB1Q9BQ65 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 SLC12A6-203ENST00000397702 4096 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
USB1Q9BQ65 MYO5C-201ENST00000261839 6971 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
USB1Q9BQ65 ELMO2-202ENST00000352077 2157 ntAPPRIS ALT1 TSL 5 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 ADH1C-204ENST00000515683 1740 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
USB1Q9BQ65 AC118282.4-201ENST00000623090 1712 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 CNFN-201ENST00000222032 523 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
USB1Q9BQ65 PPP1R14D-201ENST00000299174 757 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
USB1Q9BQ65 MIR369-201ENST00000362155 70 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 RNU6-216P-201ENST00000363282 104 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 RNU6-359P-201ENST00000365466 108 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 MUC1-206ENST00000368390 804 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
USB1Q9BQ65 MUC1-210ENST00000368398 729 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
USB1Q9BQ65 HEATR5A-201ENST00000382464 507 ntTSL 2 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 RNU6-43P-201ENST00000384302 107 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
USB1Q9BQ65 AL356057.3-201ENST00000402607 340 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 RPLP1P10-201ENST00000413972 339 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 RPL4P4-201ENST00000422486 1284 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 PPP1R14D-202ENST00000427255 747 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
USB1Q9BQ65 AC091132.2-201ENST00000433601 769 ntTSL 3 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 NPM1P18-201ENST00000434232 732 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 AL135908.1-202ENST00000454135 562 ntTSL 2 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 AC234771.3-201ENST00000454984 622 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 Y_RNA.639-201ENST00000458981 102 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 AC063943.1-201ENST00000465434 453 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 RN7SL554P-201ENST00000468197 292 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 AL163540.1-201ENST00000485382 386 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 AC090638.1-201ENST00000498296 909 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 AC026787.1-201ENST00000504182 420 ntTSL 5 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 CCDC34P1-201ENST00000507441 517 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 POU5F1P7-201ENST00000508759 541 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 OR10J2P-201ENST00000514684 961 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 Y_RNA.711-201ENST00000516993 102 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 AP001767.2-201ENST00000527291 382 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 OR7E159P-201ENST00000553761 298 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 HP-207ENST00000562526 685 ntTSL 3 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 AC013565.2-201ENST00000564874 310 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 AL591222.1-201ENST00000568063 3844 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 CD300LF-208ENST00000581500 720 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
USB1Q9BQ65 ZNF793-AS1-205ENST00000589025 560 ntTSL 2 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 EDRF1-AS1-202ENST00000593871 592 ntTSL 5 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 AC008734.2-201ENST00000595277 477 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 XIST-210ENST00000602863 775 ntTSL 3 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 AC016925.2-201ENST00000605108 242 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 AC097468.3-201ENST00000607956 456 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 AL161734.1-201ENST00000609720 557 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 AL080285.2-201ENST00000612765 458 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 AL606760.4-201ENST00000617613 718 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 AC234782.5-201ENST00000617723 324 ntBASIC7.79□□□□□ -1.16
USB1Q9BQ65 SOX5-203ENST00000396007 1379 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
USB1Q9BQ65 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
USB1Q9BQ65 ZNF781-201ENST00000358582 3147 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms