Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC005294.1-201ENST00000355509 281 ntBASIC5.65□□□□□ -1.5
VPS13AQ96RL7 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 MIR199B-201ENST00000384849 110 ntBASIC5.65□□□□□ -1.5
VPS13AQ96RL7 MIR541-201ENST00000401360 84 ntBASIC5.65□□□□□ -1.5
VPS13AQ96RL7 MIR1204-201ENST00000408388 67 ntBASIC5.65□□□□□ -1.5
VPS13AQ96RL7 AL389915.1-201ENST00000422463 466 ntBASIC5.65□□□□□ -1.5
VPS13AQ96RL7 AC234781.3-201ENST00000452540 973 ntBASIC5.65□□□□□ -1.5
VPS13AQ96RL7 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.65□□□□□ -1.5
VPS13AQ96RL7 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 OR56A7P-201ENST00000524865 941 ntBASIC5.65□□□□□ -1.5
VPS13AQ96RL7 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 AC011840.5-201ENST00000582125 771 ntBASIC5.65□□□□□ -1.5
VPS13AQ96RL7 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.65□□□□□ -1.5
VPS13AQ96RL7 AC087516.1-201ENST00000561236 2428 ntBASIC5.65□□□□□ -1.5
VPS13AQ96RL7 ZNF101-208ENST00000592502 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 GIT2-203ENST00000355312 5466 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 AC068538.1-201ENST00000376856 336 ntBASIC5.65□□□□□ -1.5
VPS13AQ96RL7 RPL23AP18-201ENST00000416139 468 ntBASIC5.65□□□□□ -1.5
VPS13AQ96RL7 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 RPL7P45-201ENST00000455851 743 ntBASIC5.65□□□□□ -1.5
VPS13AQ96RL7 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS13AQ96RL7 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
VPS13AQ96RL7 NSD2-212ENST00000503128 8568 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
VPS13AQ96RL7 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
VPS13AQ96RL7 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
VPS13AQ96RL7 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
VPS13AQ96RL7 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
VPS13AQ96RL7 AC010343.2-201ENST00000510162 224 ntBASIC5.65□□□□□ -1.51
VPS13AQ96RL7 MIR6780A-201ENST00000615089 68 ntBASIC5.65□□□□□ -1.51
VPS13AQ96RL7 AL031670.1-201ENST00000619343 669 ntTSL 3 BASIC5.65□□□□□ -1.51
VPS13AQ96RL7 AL132640.3-201ENST00000630473 177 ntBASIC5.65□□□□□ -1.51
VPS13AQ96RL7 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.65□□□□□ -1.51
VPS13AQ96RL7 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
VPS13AQ96RL7 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.51
VPS13AQ96RL7 FMNL3-201ENST00000335154 12634 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
VPS13AQ96RL7 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.65□□□□□ -1.51
VPS13AQ96RL7 PLXNA2-201ENST00000367033 11444 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 ZNF37A-201ENST00000351773 7027 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 OPCML-201ENST00000331898 6833 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 AP002364.1-201ENST00000623330 3386 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 SERPINA10-201ENST00000261994 4978 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 RBM33-207ENST00000401878 10149 ntAPPRIS P2 TSL 5 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 COL25A1-208ENST00000610288 4799 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 RNA5SP305-201ENST00000362665 119 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 RNA5SP478-201ENST00000364657 115 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 PRELID1P2-201ENST00000407805 396 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 HMGB3P24-201ENST00000433260 622 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 RN7SL604P-201ENST00000492589 296 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 BLZF2P-201ENST00000553776 1130 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 MIR1254-2-201ENST00000579553 63 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 AC015923.1-202ENST00000581421 491 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 AC012616.1-201ENST00000600294 197 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 AL590392.1-201ENST00000604960 446 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 AC093799.2-201ENST00000610062 578 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 ZBTB39-201ENST00000300101 6170 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 AC104162.1-201ENST00000430831 2382 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 EMC1-207ENST00000477853 6664 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 AC034236.1-201ENST00000469891 373 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 AL049872.1-201ENST00000556323 322 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 AC136624.4-201ENST00000573044 370 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 EIF3FP1-201ENST00000613970 806 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 WBP1LP8-201ENST00000617401 327 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 AC010435.1-201ENST00000623353 1177 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 ARMCX5-206ENST00000604957 4640 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 AC013488.1-201ENST00000526618 1838 ntBASIC5.64□□□□□ -1.51
VPS13AQ96RL7 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 HIVEP3-201ENST00000372583 12193 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
VPS13AQ96RL7 SASH1-204ENST00000622663 5075 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 AL353625.1-202ENST00000366273 571 ntBASIC5.63□□□□□ -1.51
VPS13AQ96RL7 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.63□□□□□ -1.51
VPS13AQ96RL7 AL161747.1-201ENST00000480068 358 ntBASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms