Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC006457.1-201ENST00000420733 392 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 FAM41AY1-201ENST00000421205 906 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC093698.1-201ENST00000423843 571 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC019055.1-201ENST00000432822 443 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 NDUFS5P5-201ENST00000437256 321 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 OR51P1P-201ENST00000447547 942 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 EPS15P1-201ENST00000448836 336 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 MIR4500HG-204ENST00000453832 827 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 FAM41AY2-201ENST00000458627 906 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC104763.1-201ENST00000475274 360 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 RPS27P23-201ENST00000487608 251 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 RN7SL608P-201ENST00000492377 279 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 GTF2F2P1-201ENST00000511083 675 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC113352.1-201ENST00000513196 666 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 RNU6-405P-201ENST00000516637 110 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC135983.3-201ENST00000528049 1226 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 MTCYBP41-201ENST00000528913 1123 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AP000757.2-201ENST00000531850 557 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 HMGB1P42-201ENST00000532126 553 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC079313.2-201ENST00000550474 564 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC090888.3-201ENST00000558917 509 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC109460.4-201ENST00000561471 454 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC063923.2-201ENST00000562158 928 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 ULK4P3-201ENST00000563895 440 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC007861.1-201ENST00000576671 674 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC105227.1-201ENST00000586227 438 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 ZNF559-205ENST00000586255 1016 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AL137072.1-201ENST00000603444 466 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC090186.1-201ENST00000605991 572 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC012488.1-201ENST00000611221 640 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 pRNA.12-201ENST00000614353 90 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 MIR7973-1-201ENST00000614683 76 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 uc_338.33-201ENST00000614988 170 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 pRNA.3-201ENST00000615048 90 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AL121873.1-201ENST00000616013 524 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 NR1I3-235ENST00000628566 1201 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 CUL4B-201ENST00000336592 3109 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 COX10-AS1-201ENST00000423323 3000 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AMOT-204ENST00000371962 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 EPHA4-201ENST00000281821 6346 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 C15orf41-202ENST00000437989 2240 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 LINC02150-201ENST00000513157 2120 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC087280.2-201ENST00000637205 4822 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 C7orf31-202ENST00000409280 3357 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 CYSLTR2-202ENST00000614739 1908 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 SLC2A3-201ENST00000075120 3915 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC139491.2-201ENST00000515403 3632 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 SLC25A24-202ENST00000370041 3404 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 BRD8-202ENST00000254900 4388 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 C12orf77-202ENST00000549262 1443 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 LRRC2-AS1-201ENST00000599511 2291 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC107982.1-201ENST00000507171 1300 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 CNOT4-201ENST00000315544 3783 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 EIF4B-201ENST00000262056 4148 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 LINC00299-201ENST00000430192 1760 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 RNF139-AS1-201ENST00000499418 5654 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC116535.1-201ENST00000499765 2335 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 TLR3-202ENST00000504367 2310 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 ZFX-201ENST00000304543 2996 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AL390195.2-201ENST00000564771 2023 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 FAM122C-201ENST00000370784 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 TOM1L1-220ENST00000575333 1849 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 ORM1-201ENST00000259396 802 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 OR10J6P-201ENST00000289731 930 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 OR9K2-201ENST00000305377 1122 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 OR52D1-201ENST00000322641 1065 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 FAM32BP-201ENST00000344033 333 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 RPL12-201ENST00000361436 633 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 RNU6-492P-201ENST00000363035 104 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 RNU5F-7P-201ENST00000363696 115 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 PPIAP26-201ENST00000377951 522 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 PHACTR1-204ENST00000379348 795 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 C9orf92-202ENST00000380685 379 ntAPPRIS ALT2 TSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 SNORA75-201ENST00000384158 137 ntBASIC5.98□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 176.2 ms