Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
CCDC42Q96M95 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC42Q96M95 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC42Q96M95 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC42Q96M95 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC42Q96M95 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC42Q96M95 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC42Q96M95 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC42Q96M95 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.43□□□□□ -1.38
CCDC42Q96M95 AL354868.1-201ENST00000417077 482 ntBASIC6.43□□□□□ -1.38
CCDC42Q96M95 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC42Q96M95 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC42Q96M95 AL031681.1-201ENST00000443304 400 ntBASIC6.43□□□□□ -1.38
CCDC42Q96M95 SEPHS1P4-201ENST00000446112 1176 ntBASIC6.43□□□□□ -1.38
CCDC42Q96M95 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC42Q96M95 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC42Q96M95 AL603882.1-201ENST00000463059 681 ntBASIC6.43□□□□□ -1.38
CCDC42Q96M95 AC083795.1-201ENST00000491760 320 ntBASIC6.43□□□□□ -1.38
CCDC42Q96M95 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC6.43□□□□□ -1.38
CCDC42Q96M95 AC078899.1-201ENST00000521432 1185 ntBASIC6.43□□□□□ -1.38
CCDC42Q96M95 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC42Q96M95 AP000619.2-201ENST00000546014 969 ntBASIC6.43□□□□□ -1.38
CCDC42Q96M95 ATP5G2-205ENST00000549748 728 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC42Q96M95 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC6.43□□□□□ -1.38
CCDC42Q96M95 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.43□□□□□ -1.38
CCDC42Q96M95 MIR212-201ENST00000586026 110 ntBASIC6.43□□□□□ -1.38
CCDC42Q96M95 AC063977.7-201ENST00000594454 337 ntBASIC6.43□□□□□ -1.38
CCDC42Q96M95 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC42Q96M95 AC096861.1-201ENST00000616652 240 ntBASIC6.43□□□□□ -1.38
CCDC42Q96M95 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC42Q96M95 WDR95P-201ENST00000425638 1542 ntBASIC6.43□□□□□ -1.38
CCDC42Q96M95 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC42Q96M95 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC42Q96M95 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC42Q96M95 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
CCDC42Q96M95 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC42Q96M95 AL158152.1-201ENST00000602652 1435 ntBASIC6.42□□□□□ -1.38
CCDC42Q96M95 AL121839.2-201ENST00000565058 6943 ntBASIC6.42□□□□□ -1.38
CCDC42Q96M95 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC42Q96M95 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC42Q96M95 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC42Q96M95 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC42Q96M95 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
CCDC42Q96M95 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC42Q96M95 AC018717.1-201ENST00000457712 1505 ntBASIC6.42□□□□□ -1.38
CCDC42Q96M95 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC42Q96M95 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC6.42□□□□□ -1.38
CCDC42Q96M95 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC42Q96M95 RN7SKP186-201ENST00000365371 303 ntBASIC6.42□□□□□ -1.38
CCDC42Q96M95 ARSFP1-201ENST00000398758 477 ntBASIC6.42□□□□□ -1.38
CCDC42Q96M95 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC42Q96M95 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC42Q96M95 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC42Q96M95 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC6.42□□□□□ -1.38
CCDC42Q96M95 AC016027.4-201ENST00000450866 277 ntBASIC6.42□□□□□ -1.38
CCDC42Q96M95 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC42Q96M95 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC6.42□□□□□ -1.38
CCDC42Q96M95 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC6.42□□□□□ -1.38
CCDC42Q96M95 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC6.42□□□□□ -1.38
CCDC42Q96M95 AC090826.1-203ENST00000569235 490 ntBASIC6.42□□□□□ -1.38
CCDC42Q96M95 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC42Q96M95 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC42Q96M95 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC42Q96M95 AL133481.2-203ENST00000607558 139 ntBASIC6.42□□□□□ -1.38
CCDC42Q96M95 AL122023.1-201ENST00000622847 530 ntBASIC6.42□□□□□ -1.38
CCDC42Q96M95 AC091059.2-201ENST00000623355 614 ntBASIC6.42□□□□□ -1.38
CCDC42Q96M95 ATM-229ENST00000639953 587 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC42Q96M95 UGP2-232ENST00000640075 567 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC42Q96M95 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC42Q96M95 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC42Q96M95 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC42Q96M95 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC42Q96M95 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC42Q96M95 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC42Q96M95 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC42Q96M95 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC42Q96M95 DYDC2-201ENST00000256039 1842 ntAPPRIS P3 TSL 2 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC42Q96M95 AC140134.1-201ENST00000511830 3544 ntBASIC6.41□□□□□ -1.38
CCDC42Q96M95 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC42Q96M95 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC42Q96M95 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC42Q96M95 SMPX-201ENST00000379494 938 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC42Q96M95 RPL35AP31-201ENST00000418340 337 ntBASIC6.41□□□□□ -1.38
CCDC42Q96M95 NMD3P2-201ENST00000421815 761 ntBASIC6.41□□□□□ -1.38
CCDC42Q96M95 RPL12P12-201ENST00000424633 501 ntBASIC6.41□□□□□ -1.38
CCDC42Q96M95 PSMD10P2-201ENST00000432890 672 ntBASIC6.41□□□□□ -1.38
CCDC42Q96M95 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 ZNF619P1-201ENST00000446539 752 ntBASIC6.41□□□□□ -1.38
CCDC42Q96M95 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 FRG2FP-204ENST00000453982 852 ntBASIC6.41□□□□□ -1.38
CCDC42Q96M95 RARRES2P3-201ENST00000457739 473 ntBASIC6.41□□□□□ -1.38
CCDC42Q96M95 PFN1P6-201ENST00000476786 399 ntBASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 140.8 ms