Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 RPS2P45-201ENST00000469997 2057 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 AC020656.2-201ENST00000613291 5309 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
PKNOX1P55347 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
PKNOX1P55347 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC5.89□□□□□ -1.47
PKNOX1P55347 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.89□□□□□ -1.47
PKNOX1P55347 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
PKNOX1P55347 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC5.89□□□□□ -1.47
PKNOX1P55347 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
PKNOX1P55347 AL139805.1-201ENST00000407837 289 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC5.89□□□□□ -1.47
PKNOX1P55347 AC245096.1-201ENST00000413104 546 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.89□□□□□ -1.47
PKNOX1P55347 CCNB1IP1P1-201ENST00000428976 839 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 AL022324.2-201ENST00000434827 780 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.89□□□□□ -1.47
PKNOX1P55347 AL645936.1-201ENST00000441979 518 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC5.89□□□□□ -1.47
PKNOX1P55347 OSTCP1-201ENST00000455507 450 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 RN7SL836P-201ENST00000476140 296 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.89□□□□□ -1.47
PKNOX1P55347 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC5.89□□□□□ -1.47
PKNOX1P55347 TOMM22P4-201ENST00000511318 336 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC5.89□□□□□ -1.47
PKNOX1P55347 snoU109.5-201ENST00000516231 132 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 AC136777.2-201ENST00000522979 358 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC5.89□□□□□ -1.47
PKNOX1P55347 AP000755.1-201ENST00000527100 507 ntTSL 3 BASIC5.89□□□□□ -1.47
PKNOX1P55347 DPPA3P2-202ENST00000557188 1219 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC5.89□□□□□ -1.47
PKNOX1P55347 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC5.89□□□□□ -1.47
PKNOX1P55347 AC063977.7-201ENST00000594454 337 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.89□□□□□ -1.47
PKNOX1P55347 AC025857.2-201ENST00000602711 238 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
PKNOX1P55347 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
PKNOX1P55347 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
PKNOX1P55347 AC140479.2-201ENST00000421567 3130 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
PKNOX1P55347 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
PKNOX1P55347 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
PKNOX1P55347 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
PKNOX1P55347 AL161756.3-201ENST00000641216 2071 ntBASIC5.89□□□□□ -1.47
PKNOX1P55347 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
PKNOX1P55347 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
PKNOX1P55347 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
PKNOX1P55347 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
PKNOX1P55347 AC018628.1-201ENST00000624147 3819 ntBASIC5.88□□□□□ -1.47
PKNOX1P55347 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
PKNOX1P55347 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
PKNOX1P55347 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
PKNOX1P55347 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
PKNOX1P55347 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
PKNOX1P55347 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
PKNOX1P55347 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
PKNOX1P55347 RNA5SP77-201ENST00000365394 120 ntBASIC5.88□□□□□ -1.47
PKNOX1P55347 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC5.88□□□□□ -1.47
PKNOX1P55347 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC5.88□□□□□ -1.47
PKNOX1P55347 RPS7P8-201ENST00000418311 581 ntBASIC5.88□□□□□ -1.47
PKNOX1P55347 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.88□□□□□ -1.47
PKNOX1P55347 SETP9-201ENST00000423837 832 ntBASIC5.88□□□□□ -1.47
PKNOX1P55347 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.88□□□□□ -1.47
PKNOX1P55347 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.88□□□□□ -1.47
PKNOX1P55347 RPEP4-201ENST00000437636 602 ntBASIC5.88□□□□□ -1.47
PKNOX1P55347 KRT8P51-201ENST00000438938 274 ntBASIC5.88□□□□□ -1.47
PKNOX1P55347 SEPHS1P4-201ENST00000446112 1176 ntBASIC5.88□□□□□ -1.47
PKNOX1P55347 AC117500.1-201ENST00000497352 755 ntBASIC5.88□□□□□ -1.47
PKNOX1P55347 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC5.88□□□□□ -1.47
PKNOX1P55347 AC095052.1-201ENST00000509955 863 ntBASIC5.88□□□□□ -1.47
PKNOX1P55347 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.88□□□□□ -1.47
PKNOX1P55347 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC5.88□□□□□ -1.47
PKNOX1P55347 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC5.88□□□□□ -1.47
PKNOX1P55347 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.88□□□□□ -1.47
PKNOX1P55347 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
PKNOX1P55347 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.88□□□□□ -1.47
PKNOX1P55347 MIR3157-201ENST00000578688 85 ntBASIC5.88□□□□□ -1.47
PKNOX1P55347 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC5.88□□□□□ -1.47
PKNOX1P55347 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.88□□□□□ -1.47
PKNOX1P55347 AL034374.2-201ENST00000605281 548 ntBASIC5.88□□□□□ -1.47
PKNOX1P55347 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC5.88□□□□□ -1.47
PKNOX1P55347 AL122023.1-201ENST00000622847 530 ntBASIC5.88□□□□□ -1.47
PKNOX1P55347 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.88□□□□□ -1.47
PKNOX1P55347 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
PKNOX1P55347 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC5.88□□□□□ -1.47
PKNOX1P55347 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
PKNOX1P55347 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC5.88□□□□□ -1.47
PKNOX1P55347 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
PKNOX1P55347 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.88□□□□□ -1.47
PKNOX1P55347 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
PKNOX1P55347 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
PKNOX1P55347 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
PKNOX1P55347 AC004076.2-201ENST00000620532 3323 ntBASIC5.87□□□□□ -1.47
PKNOX1P55347 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
PKNOX1P55347 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
PKNOX1P55347 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
PKNOX1P55347 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
PKNOX1P55347 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
PKNOX1P55347 RN7SKP128-201ENST00000364270 303 ntBASIC5.87□□□□□ -1.47
PKNOX1P55347 RN7SKP257-201ENST00000364525 309 ntBASIC5.87□□□□□ -1.47
PKNOX1P55347 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms