Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC7.1□□□□□ -1.27
SCN4AP35499 AC107983.2-201ENST00000425211 4735 ntTSL 2 BASIC7.09□□□□□ -1.27
SCN4AP35499 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC7.09□□□□□ -1.27
SCN4AP35499 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC7.09□□□□□ -1.27
SCN4AP35499 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
SCN4AP35499 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC7.09□□□□□ -1.27
SCN4AP35499 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC7.09□□□□□ -1.27
SCN4AP35499 SALL4P7-201ENST00000555779 3120 ntBASIC7.09□□□□□ -1.27
SCN4AP35499 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SCN4AP35499 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
SCN4AP35499 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
SCN4AP35499 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
SCN4AP35499 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC7.09□□□□□ -1.27
SCN4AP35499 HMGB1P32-201ENST00000425971 565 ntBASIC7.09□□□□□ -1.27
SCN4AP35499 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC7.09□□□□□ -1.27
SCN4AP35499 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC7.09□□□□□ -1.27
SCN4AP35499 AC068522.1-201ENST00000482895 345 ntBASIC7.09□□□□□ -1.27
SCN4AP35499 NPM1P27-201ENST00000502784 830 ntBASIC7.09□□□□□ -1.27
SCN4AP35499 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC7.09□□□□□ -1.27
SCN4AP35499 AC015818.6-201ENST00000584274 634 ntBASIC7.09□□□□□ -1.27
SCN4AP35499 SUGT1P3-202ENST00000604259 383 ntBASIC7.09□□□□□ -1.27
SCN4AP35499 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC7.09□□□□□ -1.27
SCN4AP35499 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
SCN4AP35499 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC7.09□□□□□ -1.27
SCN4AP35499 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC7.09□□□□□ -1.27
SCN4AP35499 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
SCN4AP35499 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
SCN4AP35499 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SCN4AP35499 ZNF827-203ENST00000508784 7463 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
SCN4AP35499 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SCN4AP35499 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
SCN4AP35499 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC7.09□□□□□ -1.28
SCN4AP35499 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.28
SCN4AP35499 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC7.09□□□□□ -1.28
SCN4AP35499 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC7.09□□□□□ -1.28
SCN4AP35499 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC7.09□□□□□ -1.28
SCN4AP35499 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SCN4AP35499 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SCN4AP35499 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC7.08□□□□□ -1.28
SCN4AP35499 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC7.08□□□□□ -1.28
SCN4AP35499 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC7.08□□□□□ -1.28
SCN4AP35499 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC7.08□□□□□ -1.28
SCN4AP35499 RPS4XP1-201ENST00000482189 787 ntBASIC7.08□□□□□ -1.28
SCN4AP35499 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC7.08□□□□□ -1.28
SCN4AP35499 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC7.08□□□□□ -1.28
SCN4AP35499 MRPS16P1-201ENST00000523462 412 ntBASIC7.08□□□□□ -1.28
SCN4AP35499 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC7.08□□□□□ -1.28
SCN4AP35499 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
SCN4AP35499 BRD7P6-201ENST00000431406 1860 ntBASIC7.08□□□□□ -1.28
SCN4AP35499 AC026951.1-201ENST00000559530 2459 ntBASIC7.08□□□□□ -1.28
SCN4AP35499 UTY-209ENST00000537580 6490 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SCN4AP35499 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SCN4AP35499 ZNF585A-202ENST00000356958 6822 ntTSL 2 BASIC7.08□□□□□ -1.28
SCN4AP35499 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
SCN4AP35499 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC7.08□□□□□ -1.28
SCN4AP35499 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC7.08□□□□□ -1.28
SCN4AP35499 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
SCN4AP35499 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SCN4AP35499 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
SCN4AP35499 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SCN4AP35499 ARMC8-210ENST00000469044 4790 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
SCN4AP35499 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC7.08□□□□□ -1.28
SCN4AP35499 GABARAPL3-201ENST00000412799 354 ntBASIC7.08□□□□□ -1.28
SCN4AP35499 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC7.08□□□□□ -1.28
SCN4AP35499 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC7.08□□□□□ -1.28
SCN4AP35499 CYCSP12-201ENST00000437729 300 ntBASIC7.08□□□□□ -1.28
SCN4AP35499 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC7.08□□□□□ -1.28
SCN4AP35499 RNA5SP400-201ENST00000517155 111 ntBASIC7.08□□□□□ -1.28
SCN4AP35499 CLMN-206ENST00000556441 452 ntTSL 5 BASIC7.08□□□□□ -1.28
SCN4AP35499 AC096996.1-201ENST00000563813 325 ntBASIC7.08□□□□□ -1.28
SCN4AP35499 AL445528.2-201ENST00000620582 470 ntBASIC7.08□□□□□ -1.28
SCN4AP35499 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SCN4AP35499 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SCN4AP35499 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SCN4AP35499 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SCN4AP35499 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC7.08□□□□□ -1.28
SCN4AP35499 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
SCN4AP35499 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SCN4AP35499 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC7.07□□□□□ -1.28
SCN4AP35499 HNRNPA1P54-201ENST00000411857 9714 ntBASIC7.07□□□□□ -1.28
SCN4AP35499 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SCN4AP35499 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC7.07□□□□□ -1.28
SCN4AP35499 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
SCN4AP35499 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SCN4AP35499 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SCN4AP35499 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
SCN4AP35499 RNA5SP131-201ENST00000365452 119 ntBASIC7.07□□□□□ -1.28
SCN4AP35499 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC7.07□□□□□ -1.28
SCN4AP35499 OR2W4P-201ENST00000406496 926 ntBASIC7.07□□□□□ -1.28
SCN4AP35499 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC7.07□□□□□ -1.28
SCN4AP35499 CYP4F30P-202ENST00000420048 405 ntBASIC7.07□□□□□ -1.28
SCN4AP35499 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC7.07□□□□□ -1.28
SCN4AP35499 CYCSP6-201ENST00000434498 302 ntBASIC7.07□□□□□ -1.28
SCN4AP35499 OR52B5P-201ENST00000435337 951 ntBASIC7.07□□□□□ -1.28
SCN4AP35499 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC7.07□□□□□ -1.28
SCN4AP35499 RPS26P41-201ENST00000450370 284 ntBASIC7.07□□□□□ -1.28
SCN4AP35499 AZGP1P2-201ENST00000454506 345 ntBASIC7.07□□□□□ -1.28
SCN4AP35499 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC7.07□□□□□ -1.28
SCN4AP35499 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC7.07□□□□□ -1.28
SCN4AP35499 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms