Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
RPA3P35244 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.07□□□□□ -1.44
RPA3P35244 OFD1P15Y-201ENST00000411536 1392 ntBASIC6.07□□□□□ -1.44
RPA3P35244 AL591135.1-201ENST00000401578 5914 ntBASIC6.07□□□□□ -1.44
RPA3P35244 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC6.07□□□□□ -1.44
RPA3P35244 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC6.07□□□□□ -1.44
RPA3P35244 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
RPA3P35244 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
RPA3P35244 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC6.07□□□□□ -1.44
RPA3P35244 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
RPA3P35244 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.07□□□□□ -1.44
RPA3P35244 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.07□□□□□ -1.44
RPA3P35244 RNU1-49P-201ENST00000363468 159 ntBASIC6.07□□□□□ -1.44
RPA3P35244 AL157702.1-201ENST00000398764 426 ntBASIC6.07□□□□□ -1.44
RPA3P35244 AC245096.1-201ENST00000413104 546 ntBASIC6.07□□□□□ -1.44
RPA3P35244 AL359885.1-201ENST00000415786 903 ntBASIC6.07□□□□□ -1.44
RPA3P35244 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC6.07□□□□□ -1.44
RPA3P35244 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.07□□□□□ -1.44
RPA3P35244 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC6.07□□□□□ -1.44
RPA3P35244 CUBNP2-201ENST00000443534 1139 ntBASIC6.07□□□□□ -1.44
RPA3P35244 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC6.07□□□□□ -1.44
RPA3P35244 AL451063.1-201ENST00000450164 1133 ntBASIC6.07□□□□□ -1.44
RPA3P35244 RN7SL568P-201ENST00000493069 298 ntBASIC6.07□□□□□ -1.44
RPA3P35244 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC6.07□□□□□ -1.44
RPA3P35244 AC121758.1-202ENST00000556917 658 ntBASIC6.07□□□□□ -1.44
RPA3P35244 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC6.07□□□□□ -1.44
RPA3P35244 AC010998.3-201ENST00000613871 631 ntBASIC6.07□□□□□ -1.44
RPA3P35244 TEX41-293ENST00000630451 690 ntTSL 5 BASIC6.07□□□□□ -1.44
RPA3P35244 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC6.07□□□□□ -1.44
RPA3P35244 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.07□□□□□ -1.44
RPA3P35244 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
RPA3P35244 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
RPA3P35244 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC6.07□□□□□ -1.44
RPA3P35244 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC6.07□□□□□ -1.44
RPA3P35244 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC6.07□□□□□ -1.44
RPA3P35244 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
RPA3P35244 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
RPA3P35244 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
RPA3P35244 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
RPA3P35244 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
RPA3P35244 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
RPA3P35244 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
RPA3P35244 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
RPA3P35244 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC6.07□□□□□ -1.44
RPA3P35244 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
RPA3P35244 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
RPA3P35244 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
RPA3P35244 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
RPA3P35244 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
RPA3P35244 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC6.06□□□□□ -1.44
RPA3P35244 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC6.06□□□□□ -1.44
RPA3P35244 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC6.06□□□□□ -1.44
RPA3P35244 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
RPA3P35244 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
RPA3P35244 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
RPA3P35244 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
RPA3P35244 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
RPA3P35244 RN7SKP144-201ENST00000411108 279 ntBASIC6.06□□□□□ -1.44
RPA3P35244 AC094019.1-201ENST00000434678 472 ntBASIC6.06□□□□□ -1.44
RPA3P35244 CLNS1AP1-201ENST00000435954 682 ntBASIC6.06□□□□□ -1.44
RPA3P35244 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.06□□□□□ -1.44
RPA3P35244 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.06□□□□□ -1.44
RPA3P35244 AL133351.3-201ENST00000454998 193 ntBASIC6.06□□□□□ -1.44
RPA3P35244 RPL23AP40-201ENST00000487630 390 ntBASIC6.06□□□□□ -1.44
RPA3P35244 RN7SL104P-201ENST00000498686 293 ntBASIC6.06□□□□□ -1.44
RPA3P35244 SNX18P25-201ENST00000510539 758 ntBASIC6.06□□□□□ -1.44
RPA3P35244 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC6.06□□□□□ -1.44
RPA3P35244 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC6.06□□□□□ -1.44
RPA3P35244 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC6.06□□□□□ -1.44
RPA3P35244 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC6.06□□□□□ -1.44
RPA3P35244 RPSAP75-201ENST00000605848 301 ntBASIC6.06□□□□□ -1.44
RPA3P35244 AC141002.1-201ENST00000607025 279 ntBASIC6.06□□□□□ -1.44
RPA3P35244 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC6.06□□□□□ -1.44
RPA3P35244 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC6.06□□□□□ -1.44
RPA3P35244 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
RPA3P35244 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
RPA3P35244 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
RPA3P35244 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
RPA3P35244 AL592429.1-201ENST00000403909 1473 ntBASIC6.06□□□□□ -1.44
RPA3P35244 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.06□□□□□ -1.44
RPA3P35244 AL355488.2-201ENST00000609909 2850 ntBASIC6.06□□□□□ -1.44
RPA3P35244 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
RPA3P35244 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
RPA3P35244 AP000641.1-201ENST00000531988 1639 ntBASIC6.06□□□□□ -1.44
RPA3P35244 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
RPA3P35244 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
RPA3P35244 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
RPA3P35244 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC6.06□□□□□ -1.44
RPA3P35244 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
RPA3P35244 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
RPA3P35244 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
RPA3P35244 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC6.05□□□□□ -1.44
RPA3P35244 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
RPA3P35244 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
RPA3P35244 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
RPA3P35244 AC092451.3-201ENST00000625067 1343 ntBASIC6.05□□□□□ -1.44
RPA3P35244 SAMMSON-210ENST00000641260 1308 ntBASIC6.05□□□□□ -1.44
RPA3P35244 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
RPA3P35244 GKN2-202ENST00000481498 1498 ntTSL 2 BASIC6.05□□□□□ -1.44
RPA3P35244 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms