Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.71□□□□□ -1.5
SDC1P18827 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SDC1P18827 AC104164.1-201ENST00000460282 590 ntBASIC5.71□□□□□ -1.5
SDC1P18827 PPP1R11P1-201ENST00000486095 376 ntBASIC5.71□□□□□ -1.5
SDC1P18827 NACAP5-201ENST00000509863 636 ntBASIC5.71□□□□□ -1.5
SDC1P18827 GUSBP9-201ENST00000510138 584 ntBASIC5.71□□□□□ -1.5
SDC1P18827 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC5.71□□□□□ -1.5
SDC1P18827 ASB8-203ENST00000535988 679 ntTSL 2 BASIC5.71□□□□□ -1.5
SDC1P18827 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC5.71□□□□□ -1.5
SDC1P18827 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.71□□□□□ -1.5
SDC1P18827 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SDC1P18827 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.71□□□□□ -1.5
SDC1P18827 WBP1LP11-201ENST00000586141 328 ntBASIC5.71□□□□□ -1.5
SDC1P18827 AC010809.3-201ENST00000621310 641 ntBASIC5.71□□□□□ -1.5
SDC1P18827 AL357562.1-201ENST00000624911 609 ntBASIC5.71□□□□□ -1.5
SDC1P18827 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.71□□□□□ -1.5
SDC1P18827 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.71□□□□□ -1.5
SDC1P18827 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SDC1P18827 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SDC1P18827 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
SDC1P18827 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.71□□□□□ -1.5
SDC1P18827 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.71□□□□□ -1.5
SDC1P18827 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.71□□□□□ -1.5
SDC1P18827 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.71□□□□□ -1.5
SDC1P18827 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SDC1P18827 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.71□□□□□ -1.5
SDC1P18827 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
SDC1P18827 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.71□□□□□ -1.5
SDC1P18827 AC092070.2-203ENST00000598377 3644 ntBASIC5.7□□□□□ -1.5
SDC1P18827 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.7□□□□□ -1.5
SDC1P18827 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SDC1P18827 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SDC1P18827 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
SDC1P18827 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SDC1P18827 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SDC1P18827 AC121334.1-201ENST00000396414 802 ntBASIC5.7□□□□□ -1.5
SDC1P18827 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SDC1P18827 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SDC1P18827 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC5.7□□□□□ -1.5
SDC1P18827 AC130360.1-201ENST00000425489 1117 ntBASIC5.7□□□□□ -1.5
SDC1P18827 DNAJC19P5-201ENST00000443295 316 ntBASIC5.7□□□□□ -1.5
SDC1P18827 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC5.7□□□□□ -1.5
SDC1P18827 FTLP8-201ENST00000446770 267 ntBASIC5.7□□□□□ -1.5
SDC1P18827 AC097359.1-201ENST00000447946 463 ntBASIC5.7□□□□□ -1.5
SDC1P18827 OSTCP1-201ENST00000455507 450 ntBASIC5.7□□□□□ -1.5
SDC1P18827 AC093719.1-201ENST00000480427 441 ntBASIC5.7□□□□□ -1.5
SDC1P18827 RPL38P3-201ENST00000484463 213 ntBASIC5.7□□□□□ -1.5
SDC1P18827 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SDC1P18827 ST13P12-201ENST00000508958 1094 ntBASIC5.7□□□□□ -1.5
SDC1P18827 AK6-204ENST00000512561 587 ntTSL 5 BASIC5.7□□□□□ -1.5
SDC1P18827 HMGN1P17-201ENST00000513734 295 ntBASIC5.7□□□□□ -1.5
SDC1P18827 AC130365.2-201ENST00000525882 1201 ntBASIC5.7□□□□□ -1.5
SDC1P18827 NPIPB14P-203ENST00000532298 987 ntBASIC5.7□□□□□ -1.5
SDC1P18827 AC023310.2-201ENST00000553844 547 ntBASIC5.7□□□□□ -1.5
SDC1P18827 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC5.7□□□□□ -1.5
SDC1P18827 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.7□□□□□ -1.5
SDC1P18827 MIR4701-201ENST00000583094 63 ntBASIC5.7□□□□□ -1.5
SDC1P18827 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5.7□□□□□ -1.5
SDC1P18827 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC5.7□□□□□ -1.5
SDC1P18827 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.7□□□□□ -1.5
SDC1P18827 NQO2-209ENST00000606474 470 ntTSL 3 BASIC5.7□□□□□ -1.5
SDC1P18827 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC5.7□□□□□ -1.5
SDC1P18827 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SDC1P18827 AL135999.3-201ENST00000610501 812 ntBASIC5.7□□□□□ -1.5
SDC1P18827 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SDC1P18827 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC5.7□□□□□ -1.5
SDC1P18827 AL512652.1-201ENST00000619006 500 ntBASIC5.7□□□□□ -1.5
SDC1P18827 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SDC1P18827 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.7□□□□□ -1.5
SDC1P18827 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SDC1P18827 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC5.7□□□□□ -1.5
SDC1P18827 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SDC1P18827 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
SDC1P18827 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SDC1P18827 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SDC1P18827 AP001157.1-201ENST00000550837 2339 ntBASIC5.7□□□□□ -1.5
SDC1P18827 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.7□□□□□ -1.5
SDC1P18827 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.7□□□□□ -1.5
SDC1P18827 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.7□□□□□ -1.5
SDC1P18827 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC5.7□□□□□ -1.5
SDC1P18827 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SDC1P18827 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.69□□□□□ -1.5
SDC1P18827 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.69□□□□□ -1.5
SDC1P18827 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC5.69□□□□□ -1.5
SDC1P18827 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SDC1P18827 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
SDC1P18827 RN7SKP128-201ENST00000364270 303 ntBASIC5.69□□□□□ -1.5
SDC1P18827 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SDC1P18827 AL035422.1-201ENST00000414193 397 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms