Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC7.79□□□□□ -1.16
HMGB1P09429 MTND5P8-201ENST00000449817 1083 ntBASIC7.79□□□□□ -1.16
HMGB1P09429 RPL7AP52-201ENST00000458096 790 ntBASIC7.79□□□□□ -1.16
HMGB1P09429 EIF4A2P4-201ENST00000458691 1196 ntBASIC7.79□□□□□ -1.16
HMGB1P09429 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC7.79□□□□□ -1.16
HMGB1P09429 RPL23AP64-201ENST00000469465 435 ntBASIC7.79□□□□□ -1.16
HMGB1P09429 ENSA-211ENST00000503345 793 ntTSL 3 BASIC7.79□□□□□ -1.16
HMGB1P09429 TBCA-209ENST00000522370 435 ntTSL 3 BASIC7.79□□□□□ -1.16
HMGB1P09429 AC008429.2-201ENST00000523057 864 ntBASIC7.79□□□□□ -1.16
HMGB1P09429 ELK3-206ENST00000552142 1242 ntTSL 5 BASIC7.79□□□□□ -1.16
HMGB1P09429 AC089984.3-201ENST00000552838 363 ntBASIC7.79□□□□□ -1.16
HMGB1P09429 HNRNPA1P74-201ENST00000560782 835 ntBASIC7.79□□□□□ -1.16
HMGB1P09429 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC7.79□□□□□ -1.16
HMGB1P09429 AC016383.1-201ENST00000582700 714 ntTSL 3 BASIC7.79□□□□□ -1.16
HMGB1P09429 AC005242.1-201ENST00000585658 438 ntBASIC7.79□□□□□ -1.16
HMGB1P09429 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC7.79□□□□□ -1.16
HMGB1P09429 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC7.79□□□□□ -1.16
HMGB1P09429 AC067852.5-201ENST00000589299 310 ntBASIC7.79□□□□□ -1.16
HMGB1P09429 AL049844.2-201ENST00000604280 628 ntBASIC7.79□□□□□ -1.16
HMGB1P09429 AC012254.5-201ENST00000623573 478 ntBASIC7.79□□□□□ -1.16
HMGB1P09429 AP002967.1-201ENST00000624203 539 ntBASIC7.79□□□□□ -1.16
HMGB1P09429 AL121936.2-201ENST00000641935 662 ntBASIC7.79□□□□□ -1.16
HMGB1P09429 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC7.79□□□□□ -1.16
HMGB1P09429 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC7.79□□□□□ -1.16
HMGB1P09429 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC7.79□□□□□ -1.16
HMGB1P09429 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
HMGB1P09429 TMEM267-201ENST00000397080 2338 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
HMGB1P09429 LINC02019-201ENST00000608605 2060 ntBASIC7.79□□□□□ -1.16
HMGB1P09429 AC022417.1-201ENST00000624768 1303 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC7.78□□□□□ -1.16
HMGB1P09429 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC7.78□□□□□ -1.16
HMGB1P09429 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC7.78□□□□□ -1.16
HMGB1P09429 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC7.78□□□□□ -1.16
HMGB1P09429 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC7.78□□□□□ -1.16
HMGB1P09429 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
HMGB1P09429 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HMGB1P09429 WBP11P1-201ENST00000562560 1931 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HMGB1P09429 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC7.78□□□□□ -1.16
HMGB1P09429 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HMGB1P09429 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC7.78□□□□□ -1.16
HMGB1P09429 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HMGB1P09429 OR4D11-201ENST00000313253 936 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
HMGB1P09429 STAG3L4-201ENST00000352103 530 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 SNORD115-48-201ENST00000364764 76 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
HMGB1P09429 FDPSP5-201ENST00000399474 1057 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 HIBCH-207ENST00000410045 854 ntTSL 3 BASIC7.78□□□□□ -1.16
HMGB1P09429 SPATA20P1-201ENST00000423089 438 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AL451136.1-201ENST00000435399 325 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 OR13K1P-201ENST00000444577 975 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 RPS15AP29-201ENST00000445539 400 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AL354710.1-201ENST00000453641 246 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC7.78□□□□□ -1.16
HMGB1P09429 RNU7-27P-201ENST00000459281 62 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AC092691.2-201ENST00000461787 803 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AC116562.1-201ENST00000485355 781 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AL079303.1-201ENST00000486611 463 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 RN7SL350P-201ENST00000492591 299 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AC008868.1-201ENST00000509786 737 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AC108120.2-201ENST00000512973 294 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC7.78□□□□□ -1.16
HMGB1P09429 MINOS1P4-201ENST00000515470 318 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 SCARNA5-201ENST00000516201 276 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC7.78□□□□□ -1.16
HMGB1P09429 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC7.78□□□□□ -1.16
HMGB1P09429 AP002004.1-206ENST00000532441 876 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 OR9G2P-201ENST00000533326 880 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HMGB1P09429 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC7.78□□□□□ -1.16
HMGB1P09429 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC7.78□□□□□ -1.16
HMGB1P09429 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC7.78□□□□□ -1.16
HMGB1P09429 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC7.78□□□□□ -1.16
HMGB1P09429 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
HMGB1P09429 AC022884.3-201ENST00000579571 248 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 RN7SL32P-201ENST00000580514 281 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC7.78□□□□□ -1.16
HMGB1P09429 RPL7AP69-201ENST00000595306 806 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AL078623.1-201ENST00000602702 907 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AL137072.1-201ENST00000603444 466 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC7.78□□□□□ -1.16
HMGB1P09429 AP001264.1-201ENST00000620602 703 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AL356490.1-201ENST00000623079 479 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AC005514.1-201ENST00000623521 208 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AC027559.1-201ENST00000636288 271 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC7.78□□□□□ -1.16
HMGB1P09429 AC010132.4-201ENST00000569883 1368 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 AF287957.1-201ENST00000607368 1595 ntBASIC7.78□□□□□ -1.16
HMGB1P09429 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HMGB1P09429 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
HMGB1P09429 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC7.78□□□□□ -1.16
HMGB1P09429 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HMGB1P09429 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
HMGB1P09429 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
HMGB1P09429 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HMGB1P09429 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC7.78□□□□□ -1.16
HMGB1P09429 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC7.78□□□□□ -1.16
HMGB1P09429 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC7.78□□□□□ -1.16
HMGB1P09429 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
HMGB1P09429 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms