Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC068533.2-201ENST00000411872 306 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 RPLP1P10-201ENST00000413972 339 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 CYTOR-207ENST00000414584 772 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 AC093580.1-201ENST00000420549 671 ntTSL 3 BASIC6□□□□□ -1.45
CCDC140Q96MF4 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC6□□□□□ -1.45
CCDC140Q96MF4 AC064875.1-203ENST00000422996 582 ntTSL 4 BASIC6□□□□□ -1.45
CCDC140Q96MF4 RPL23AP34-201ENST00000423483 410 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 FBP2P1-202ENST00000424473 530 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 ARL6IP1P2-201ENST00000431356 563 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 Z74696.2-201ENST00000436514 498 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 LARP1BP3-201ENST00000437229 869 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 AC123904.1-201ENST00000441072 368 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC6□□□□□ -1.45
CCDC140Q96MF4 AL355472.1-201ENST00000451795 575 ntTSL 5 BASIC6□□□□□ -1.45
CCDC140Q96MF4 AL591438.2-201ENST00000452635 691 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 AL450263.1-202ENST00000453199 643 ntTSL 3 BASIC6□□□□□ -1.45
CCDC140Q96MF4 AL590490.1-201ENST00000455599 316 ntTSL 5 BASIC6□□□□□ -1.45
CCDC140Q96MF4 AC124861.1-201ENST00000457178 429 ntTSL 5 BASIC6□□□□□ -1.45
CCDC140Q96MF4 ARPC3P2-201ENST00000457786 533 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC6□□□□□ -1.45
CCDC140Q96MF4 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC6□□□□□ -1.45
CCDC140Q96MF4 AL928654.1-201ENST00000476081 354 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 AC026254.1-201ENST00000479473 431 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC6□□□□□ -1.45
CCDC140Q96MF4 RPL9P33-201ENST00000484311 566 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 RPL7P41-201ENST00000485823 957 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 AC006499.5-201ENST00000505037 514 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 AC025180.1-201ENST00000505701 595 ntTSL 4 BASIC6□□□□□ -1.45
CCDC140Q96MF4 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC6□□□□□ -1.45
CCDC140Q96MF4 RPL7L1P13-201ENST00000511702 739 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 AC108471.1-201ENST00000513977 287 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 NR1I3-233ENST00000515452 1093 ntTSL 2 BASIC6□□□□□ -1.45
CCDC140Q96MF4 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC6□□□□□ -1.45
CCDC140Q96MF4 RNY4P37-201ENST00000516225 96 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 RNA5SP135-201ENST00000517019 125 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC6□□□□□ -1.45
CCDC140Q96MF4 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC6□□□□□ -1.45
CCDC140Q96MF4 AC084026.2-201ENST00000521101 642 ntTSL 3 BASIC6□□□□□ -1.45
CCDC140Q96MF4 TPT1-AS1-214ENST00000521507 665 ntTSL 5 BASIC6□□□□□ -1.45
CCDC140Q96MF4 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC6□□□□□ -1.45
CCDC140Q96MF4 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC6□□□□□ -1.45
CCDC140Q96MF4 OR4A21P-201ENST00000532759 944 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 MEPE-208ENST00000540395 2135 ntAPPRIS ALT2 TSL 4 BASIC6□□□□□ -1.45
CCDC140Q96MF4 PFDN5-211ENST00000550846 392 ntTSL 2 BASIC6□□□□□ -1.45
CCDC140Q96MF4 PFDN5-214ENST00000551018 847 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 AP005328.1-201ENST00000577719 681 ntTSL 3 BASIC6□□□□□ -1.45
CCDC140Q96MF4 RN7SL376P-201ENST00000578594 264 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 MIR3689F-201ENST00000579617 66 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 KCTD2-206ENST00000581589 993 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 AP005210.1-201ENST00000583659 544 ntTSL 2 BASIC6□□□□□ -1.45
CCDC140Q96MF4 AC105243.1-202ENST00000583942 847 ntTSL 3 BASIC6□□□□□ -1.45
CCDC140Q96MF4 AC008770.1-209ENST00000591898 356 ntTSL 3 BASIC6□□□□□ -1.45
CCDC140Q96MF4 VN1R92P-201ENST00000598511 928 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC6□□□□□ -1.45
CCDC140Q96MF4 AC138749.5-201ENST00000611461 208 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 RIPOR2-208ENST00000613507 5539 ntAPPRIS P4 TSL 5 BASIC6□□□□□ -1.45
CCDC140Q96MF4 Metazoa_SRP.123-201ENST00000616695 286 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 AC018926.3-201ENST00000618841 406 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 AL357562.1-201ENST00000624911 609 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 STK32A-209ENST00000626951 798 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 AC245505.2-201ENST00000553572 3055 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 IL15-207ENST00000514653 1388 ntTSL 5 BASIC6□□□□□ -1.45
CCDC140Q96MF4 Z93929.1-201ENST00000418200 1475 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 CEACAM6-201ENST00000199764 2700 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 SELP-201ENST00000263686 3142 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 DDX18P4-201ENST00000511690 1966 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 LRBA-204ENST00000507224 8826 ntTSL 5 BASIC6□□□□□ -1.45
CCDC140Q96MF4 HERC4-202ENST00000373700 3905 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 CACNB4-269ENST00000638005 4615 ntTSL 2 BASIC6□□□□□ -1.45
CCDC140Q96MF4 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC6□□□□□ -1.45
CCDC140Q96MF4 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC090771.1-201ENST00000585803 1618 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 NPL-203ENST00000367553 2231 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 ZNF226-213ENST00000588883 5972 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 MORC1-202ENST00000483760 3056 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 SUPT7L-205ENST00000464789 2664 ntAPPRIS ALT1 TSL 5 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC087501.5-201ENST00000607496 2374 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC025040.2-201ENST00000558657 1852 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 CASC19-284ENST00000642142 1868 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 EIF2A-202ENST00000406576 1795 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 RGS6-205ENST00000406236 1476 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 SLFN13-209ENST00000533791 4121 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 BSPH1-201ENST00000344839 654 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 TMEM126B-201ENST00000358867 989 ntAPPRIS P3 TSL 2 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 RNA5SP389-201ENST00000362610 115 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 RNA5SP226-201ENST00000362653 115 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 RNU6-582P-201ENST00000362989 107 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 RNA5SP161-201ENST00000363871 115 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 RNA5SP149-201ENST00000364952 92 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC133644.1-201ENST00000398171 937 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 NCSTNP1-201ENST00000406229 144 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 RN7SKP207-201ENST00000411204 303 ntBASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC006547.2-201ENST00000412713 526 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC140Q96MF4 AC092042.2-201ENST00000417304 331 ntBASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms