Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC008555.7-201ENST00000605008 583 ntBASIC6.46□□□□□ -1.38
PTPN9P43378 SNORA35B-201ENST00000607417 129 ntBASIC6.46□□□□□ -1.38
PTPN9P43378 AC007620.3-201ENST00000608131 497 ntBASIC6.46□□□□□ -1.38
PTPN9P43378 uc_338.29-201ENST00000615099 168 ntBASIC6.46□□□□□ -1.38
PTPN9P43378 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.46□□□□□ -1.38
PTPN9P43378 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC6.46□□□□□ -1.38
PTPN9P43378 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC6.46□□□□□ -1.38
PTPN9P43378 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.38
PTPN9P43378 AL033543.1-201ENST00000623440 13454 ntBASIC6.46□□□□□ -1.38
PTPN9P43378 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.38
PTPN9P43378 BX284613.1-201ENST00000452221 1641 ntBASIC6.46□□□□□ -1.38
PTPN9P43378 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
PTPN9P43378 SAMMSON-210ENST00000641260 1308 ntBASIC6.46□□□□□ -1.38
PTPN9P43378 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC6.46□□□□□ -1.38
PTPN9P43378 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.46□□□□□ -1.38
PTPN9P43378 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
PTPN9P43378 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.46□□□□□ -1.38
PTPN9P43378 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.46□□□□□ -1.38
PTPN9P43378 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
PTPN9P43378 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
PTPN9P43378 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
PTPN9P43378 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC6.45□□□□□ -1.38
PTPN9P43378 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
PTPN9P43378 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC6.45□□□□□ -1.38
PTPN9P43378 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
PTPN9P43378 OR7E25P-201ENST00000344844 931 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
PTPN9P43378 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
PTPN9P43378 RN7SKP151-201ENST00000410230 316 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 RN7SKP108-201ENST00000411367 328 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC6.45□□□□□ -1.38
PTPN9P43378 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC6.45□□□□□ -1.38
PTPN9P43378 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC6.45□□□□□ -1.38
PTPN9P43378 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC6.45□□□□□ -1.38
PTPN9P43378 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC6.45□□□□□ -1.38
PTPN9P43378 AC044810.1-201ENST00000480271 711 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 PPP1R11P1-201ENST00000486095 376 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 AC114728.1-201ENST00000488289 483 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 RPL9P15-201ENST00000491096 532 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 RPS27P20-201ENST00000492051 246 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 RN7SL362P-201ENST00000494228 267 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC6.45□□□□□ -1.38
PTPN9P43378 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC6.45□□□□□ -1.38
PTPN9P43378 CYP4F27P-201ENST00000514557 494 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 AP002981.1-201ENST00000517692 975 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.45□□□□□ -1.38
PTPN9P43378 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC6.45□□□□□ -1.38
PTPN9P43378 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC6.45□□□□□ -1.38
PTPN9P43378 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.45□□□□□ -1.38
PTPN9P43378 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
PTPN9P43378 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC6.45□□□□□ -1.38
PTPN9P43378 AP005136.2-201ENST00000583253 1049 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC6.45□□□□□ -1.38
PTPN9P43378 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC6.45□□□□□ -1.38
PTPN9P43378 AC027334.1-201ENST00000603257 310 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 AC087468.1-201ENST00000604365 630 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 BX322635.1-201ENST00000605804 496 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 AL135999.3-201ENST00000610501 812 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 AL133445.2-201ENST00000611191 527 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 AC022106.1-201ENST00000612834 766 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 AL080312.2-201ENST00000613001 630 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 AC244100.4-201ENST00000617747 388 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC6.45□□□□□ -1.38
PTPN9P43378 CREM-203ENST00000344351 1625 ntTSL 2 BASIC6.45□□□□□ -1.38
PTPN9P43378 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
PTPN9P43378 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
PTPN9P43378 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
PTPN9P43378 AC022417.1-201ENST00000624768 1303 ntBASIC6.45□□□□□ -1.38
PTPN9P43378 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
PTPN9P43378 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.45□□□□□ -1.38
PTPN9P43378 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.44□□□□□ -1.38
PTPN9P43378 AC130360.2-201ENST00000533477 1556 ntBASIC6.44□□□□□ -1.38
PTPN9P43378 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.44□□□□□ -1.38
PTPN9P43378 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
PTPN9P43378 TMCC1P1-201ENST00000518897 1980 ntBASIC6.44□□□□□ -1.38
PTPN9P43378 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
PTPN9P43378 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.44□□□□□ -1.38
PTPN9P43378 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
PTPN9P43378 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
PTPN9P43378 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
PTPN9P43378 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
PTPN9P43378 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
PTPN9P43378 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
PTPN9P43378 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
PTPN9P43378 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.38
PTPN9P43378 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
PTPN9P43378 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC6.44□□□□□ -1.38
PTPN9P43378 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
PTPN9P43378 AL451046.1-201ENST00000406097 534 ntBASIC6.44□□□□□ -1.38
PTPN9P43378 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC6.44□□□□□ -1.38
PTPN9P43378 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
PTPN9P43378 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC6.44□□□□□ -1.38
PTPN9P43378 AL354707.3-201ENST00000427308 331 ntBASIC6.44□□□□□ -1.38
PTPN9P43378 MTND3P4-201ENST00000453537 303 ntBASIC6.44□□□□□ -1.38
PTPN9P43378 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC6.44□□□□□ -1.38
PTPN9P43378 AC112187.1-201ENST00000455837 479 ntBASIC6.44□□□□□ -1.38
PTPN9P43378 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC6.44□□□□□ -1.38
PTPN9P43378 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC6.44□□□□□ -1.38
PTPN9P43378 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms