Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 AMPD3-202ENST00000396553 3680 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 IKZF3-207ENST00000377944 1669 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 IKZF3-208ENST00000377945 1696 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 IL5RA-206ENST00000430514 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 AC006058.1-201ENST00000568686 5067 ntBASIC7.41□□□□□ -1.22
MSX1P28360 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
MSX1P28360 CCNC-204ENST00000482541 1704 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC7.41□□□□□ -1.22
MSX1P28360 ODF2-209ENST00000434106 3890 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 CYP4A22-202ENST00000371890 1780 ntTSL 5 BASIC7.41□□□□□ -1.22
MSX1P28360 NELL1-201ENST00000298925 3329 ntAPPRIS ALT2 TSL 2 BASIC7.41□□□□□ -1.22
MSX1P28360 POGZ-205ENST00000409503 4813 ntAPPRIS ALT1 TSL 2 BASIC7.41□□□□□ -1.22
MSX1P28360 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 AC012360.3-201ENST00000610036 3449 ntBASIC7.41□□□□□ -1.22
MSX1P28360 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC7.41□□□□□ -1.22
MSX1P28360 GOLGA8B-202ENST00000438958 4252 ntAPPRIS ALT2 TSL 5 BASIC7.41□□□□□ -1.22
MSX1P28360 ZNF585B-203ENST00000527838 2732 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 ZNF3-202ENST00000299667 2799 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 FAM13A-218ENST00000511976 3579 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 LIMS1-203ENST00000393310 4392 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 IFNA7-201ENST00000239347 737 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
MSX1P28360 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
MSX1P28360 PPIH-201ENST00000304979 752 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 CD44-205ENST00000352818 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 Y_RNA.89-201ENST00000363031 102 ntBASIC7.41□□□□□ -1.22
MSX1P28360 RNU1-21P-201ENST00000363327 163 ntBASIC7.41□□□□□ -1.22
MSX1P28360 AC093392.1-201ENST00000366280 340 ntBASIC7.41□□□□□ -1.22
MSX1P28360 SPRR1A-201ENST00000368762 270 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
MSX1P28360 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC7.41□□□□□ -1.22
MSX1P28360 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
MSX1P28360 RNVU1-15-201ENST00000384476 165 ntBASIC7.41□□□□□ -1.22
MSX1P28360 CASP8-208ENST00000392266 1283 ntTSL 2 BASIC7.41□□□□□ -1.22
MSX1P28360 AL138807.1-201ENST00000400354 459 ntBASIC7.41□□□□□ -1.22
MSX1P28360 SNORD3J-201ENST00000408473 190 ntBASIC7.41□□□□□ -1.22
MSX1P28360 RNU6-248P-201ENST00000410720 107 ntBASIC7.41□□□□□ -1.22
MSX1P28360 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC7.41□□□□□ -1.22
MSX1P28360 CTSLP8-201ENST00000413075 967 ntBASIC7.41□□□□□ -1.22
MSX1P28360 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC7.41□□□□□ -1.22
MSX1P28360 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC7.41□□□□□ -1.22
MSX1P28360 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC7.41□□□□□ -1.22
MSX1P28360 MTND2P23-201ENST00000422990 651 ntBASIC7.41□□□□□ -1.22
MSX1P28360 AL049758.1-201ENST00000423154 397 ntBASIC7.41□□□□□ -1.22
MSX1P28360 FBP2P1-202ENST00000424473 530 ntBASIC7.41□□□□□ -1.22
MSX1P28360 AC073464.1-201ENST00000429823 534 ntBASIC7.41□□□□□ -1.22
MSX1P28360 AC009228.1-203ENST00000430105 432 ntTSL 3 BASIC7.41□□□□□ -1.22
MSX1P28360 MTCYBP45-201ENST00000435243 565 ntBASIC7.41□□□□□ -1.22
MSX1P28360 FMO7P-201ENST00000436045 768 ntBASIC7.41□□□□□ -1.22
MSX1P28360 RPL29P7-201ENST00000440227 457 ntBASIC7.41□□□□□ -1.22
MSX1P28360 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC7.41□□□□□ -1.22
MSX1P28360 AC005840.2-201ENST00000447193 355 ntBASIC7.41□□□□□ -1.22
MSX1P28360 AC092569.1-201ENST00000455192 258 ntBASIC7.41□□□□□ -1.22
MSX1P28360 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 GAPDHP38-201ENST00000503632 1002 ntBASIC7.41□□□□□ -1.22
MSX1P28360 AC019235.1-201ENST00000503847 207 ntBASIC7.41□□□□□ -1.22
MSX1P28360 AC112203.1-201ENST00000506315 1020 ntBASIC7.41□□□□□ -1.22
MSX1P28360 OR5M14P-201ENST00000506803 618 ntBASIC7.41□□□□□ -1.22
MSX1P28360 AC098487.1-204ENST00000506972 610 ntTSL 3 BASIC7.41□□□□□ -1.22
MSX1P28360 AC139491.5-201ENST00000510029 920 ntTSL 5 BASIC7.41□□□□□ -1.22
MSX1P28360 LINC02150-201ENST00000513157 2120 ntTSL 5 BASIC7.41□□□□□ -1.22
MSX1P28360 MINCR-206ENST00000524335 499 ntTSL 2 BASIC7.41□□□□□ -1.22
MSX1P28360 LINC02443-201ENST00000536518 585 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 AL352979.3-201ENST00000553515 247 ntBASIC7.41□□□□□ -1.22
MSX1P28360 PSMB7P1-201ENST00000556349 514 ntBASIC7.41□□□□□ -1.22
MSX1P28360 LINC02345-202ENST00000558081 1147 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC7.41□□□□□ -1.22
MSX1P28360 LINC01572-204ENST00000570035 831 ntTSL 3 BASIC7.41□□□□□ -1.22
MSX1P28360 TBC1D29-201ENST00000579181 652 ntAPPRIS P2 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 MIR3689F-201ENST00000579617 66 ntBASIC7.41□□□□□ -1.22
MSX1P28360 MIR4666A-201ENST00000580160 79 ntBASIC7.41□□□□□ -1.22
MSX1P28360 TBC1D29-204ENST00000584297 602 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 AC010928.3-201ENST00000587712 541 ntBASIC7.41□□□□□ -1.22
MSX1P28360 AC074135.1-201ENST00000594318 581 ntTSL 4 BASIC7.41□□□□□ -1.22
MSX1P28360 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC7.41□□□□□ -1.22
MSX1P28360 AC024560.3-201ENST00000608482 349 ntBASIC7.41□□□□□ -1.22
MSX1P28360 RN7SL3-201ENST00000610674 299 ntBASIC7.41□□□□□ -1.22
MSX1P28360 OR8G7P-201ENST00000616658 848 ntBASIC7.41□□□□□ -1.22
MSX1P28360 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC7.41□□□□□ -1.22
MSX1P28360 AL445670.1-201ENST00000618889 801 ntBASIC7.41□□□□□ -1.22
MSX1P28360 AL445264.1-201ENST00000621719 171 ntBASIC7.41□□□□□ -1.22
MSX1P28360 AC005841.2-201ENST00000637658 1167 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
MSX1P28360 MIR193BHG-210ENST00000641327 515 ntBASIC7.41□□□□□ -1.22
MSX1P28360 SLC9B1P1-201ENST00000331172 1337 ntBASIC7.41□□□□□ -1.22
MSX1P28360 NELL2-217ENST00000551601 3148 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 AC114324.1-201ENST00000504077 3152 ntBASIC7.41□□□□□ -1.22
MSX1P28360 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC7.41□□□□□ -1.22
MSX1P28360 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 TRIM60P14-201ENST00000513444 1419 ntBASIC7.41□□□□□ -1.22
MSX1P28360 MAT1A-201ENST00000372213 3410 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 AC018765.1-201ENST00000623357 3446 ntBASIC7.41□□□□□ -1.22
MSX1P28360 CCNT2-202ENST00000295238 4491 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 AC108451.1-201ENST00000558208 2520 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 GLI1-201ENST00000228682 3613 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSX1P28360 GLRA4-201ENST00000372617 1795 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
MSX1P28360 LINC02408-201ENST00000400306 1766 ntTSL 2 BASIC7.41□□□□□ -1.22
MSX1P28360 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC7.41□□□□□ -1.22
MSX1P28360 GATAD2B-203ENST00000634408 1825 ntTSL 5 BASIC7.41□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms