Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DMBP28068 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DMBP28068 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DMBP28068 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DMBP28068 AC118758.1-202ENST00000454719 225 ntBASIC4.68□□□□□ -1.66
HLA-DMBP28068 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 RN7SL39P-201ENST00000462264 297 ntBASIC4.68□□□□□ -1.66
HLA-DMBP28068 RNA5SP206-201ENST00000516703 121 ntBASIC4.68□□□□□ -1.66
HLA-DMBP28068 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 AC135983.3-201ENST00000528049 1226 ntBASIC4.68□□□□□ -1.66
HLA-DMBP28068 RPA2P3-201ENST00000533268 770 ntBASIC4.68□□□□□ -1.66
HLA-DMBP28068 RPL41P2-201ENST00000544920 409 ntBASIC4.68□□□□□ -1.66
HLA-DMBP28068 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DMBP28068 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 LSM1P2-201ENST00000604911 322 ntBASIC4.68□□□□□ -1.66
HLA-DMBP28068 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 AL137067.2-201ENST00000621202 131 ntBASIC4.68□□□□□ -1.66
HLA-DMBP28068 AL122023.1-201ENST00000622847 530 ntBASIC4.68□□□□□ -1.66
HLA-DMBP28068 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 AC027575.3-201ENST00000583058 2747 ntBASIC4.68□□□□□ -1.66
HLA-DMBP28068 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DMBP28068 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 ATP5A1P4-201ENST00000556888 1605 ntBASIC4.68□□□□□ -1.66
HLA-DMBP28068 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DMBP28068 NLRP3P1-201ENST00000622303 1785 ntBASIC4.68□□□□□ -1.66
HLA-DMBP28068 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC4.68□□□□□ -1.66
HLA-DMBP28068 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DMBP28068 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DMBP28068 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DMBP28068 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DMBP28068 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DMBP28068 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DMBP28068 RN7SKP187-201ENST00000365536 330 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DMBP28068 AL121835.1-201ENST00000404250 354 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 AC002127.1-201ENST00000421305 225 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DMBP28068 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 GAPDHP34-201ENST00000432112 823 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 GAPDHP23-201ENST00000444823 993 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 MORF4-201ENST00000447135 971 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 RPL7L1P3-201ENST00000455249 689 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 AC012123.2-201ENST00000485809 248 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 AL035690.1-201ENST00000490892 383 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 AC122718.2-201ENST00000505325 591 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 AC113367.2-201ENST00000505749 160 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 Y_RNA.710-201ENST00000516975 110 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 IGHV4-55-201ENST00000520889 368 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DMBP28068 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DMBP28068 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 SETP3-201ENST00000581726 813 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 AC004890.3-201ENST00000605566 1095 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 AL591167.1-201ENST00000607321 456 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 AL136097.3-201ENST00000611097 505 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 AC010325.3-201ENST00000641084 394 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 5S_rRNA.29-201ENST00000641250 107 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 AC232271.1-201ENST00000602455 2715 ntBASIC4.67□□□□□ -1.66
HLA-DMBP28068 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DMBP28068 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms