Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MTIF3-202ENST00000381120 1005 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 Y_RNA.459-201ENST00000384251 102 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 RNU6-574P-201ENST00000384265 107 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 RNU6-196P-201ENST00000384315 107 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 MED28P1-201ENST00000399158 571 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 CALM2P3-201ENST00000400429 449 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 AL353651.1-201ENST00000415629 355 ntTSL 5 BASIC7.05□□□□□ -1.28
COL8A1P27658 LINC00676-201ENST00000416090 474 ntTSL 5 BASIC7.05□□□□□ -1.28
COL8A1P27658 LINC02090-201ENST00000419151 400 ntTSL 3 BASIC7.05□□□□□ -1.28
COL8A1P27658 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC7.05□□□□□ -1.28
COL8A1P27658 ZEB1-AS1-202ENST00000424191 320 ntTSL 3 BASIC7.05□□□□□ -1.28
COL8A1P27658 AL445524.1-205ENST00000425412 392 ntTSL 2 BASIC7.05□□□□□ -1.28
COL8A1P27658 AC104843.2-201ENST00000427666 297 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
COL8A1P27658 AC092802.3-201ENST00000434207 420 ntTSL 3 BASIC7.05□□□□□ -1.28
COL8A1P27658 HCG20-208ENST00000439406 1202 ntTSL 2 BASIC7.05□□□□□ -1.28
COL8A1P27658 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC7.05□□□□□ -1.28
COL8A1P27658 AL512593.1-201ENST00000444758 779 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC7.05□□□□□ -1.28
COL8A1P27658 DHFRP3-201ENST00000455595 559 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 PNPLA4P1-201ENST00000458328 305 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 TAAR3P-201ENST00000466706 1078 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 TAAR3P-202ENST00000481759 1025 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 TAF8-207ENST00000482432 556 ntTSL 2 BASIC7.05□□□□□ -1.28
COL8A1P27658 RN7SL864P-201ENST00000493457 285 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 AC008799.1-201ENST00000495909 457 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 AC021146.2-201ENST00000504736 556 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 HSPE1P10-201ENST00000508631 558 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 AC009646.1-201ENST00000510455 318 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 AC138517.1-201ENST00000515724 568 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 IGHVII-26-2-201ENST00000518751 325 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 FBXO16-208ENST00000519471 398 ntTSL 2 BASIC7.05□□□□□ -1.28
COL8A1P27658 AC044839.1-209ENST00000529769 878 ntTSL 5 BASIC7.05□□□□□ -1.28
COL8A1P27658 AP002004.1-206ENST00000532441 876 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 CRTC3-AS1-201ENST00000558105 502 ntTSL 5 BASIC7.05□□□□□ -1.28
COL8A1P27658 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC7.05□□□□□ -1.28
COL8A1P27658 AC125421.2-201ENST00000580370 583 ntTSL 4 BASIC7.05□□□□□ -1.28
COL8A1P27658 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC7.05□□□□□ -1.28
COL8A1P27658 AC103881.1-201ENST00000603476 538 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 BNIP3P10-201ENST00000605360 577 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 AL021368.3-201ENST00000607119 578 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC7.05□□□□□ -1.28
COL8A1P27658 AL365434.2-201ENST00000607979 234 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 AC105429.2-201ENST00000610567 517 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 FKBP1AP4-201ENST00000631775 336 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 ATP5E-201ENST00000243997 3665 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 SPATA31A6-201ENST00000332857 4209 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 CLUAP1-212ENST00000576634 4163 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 TAGAP-203ENST00000367066 3887 ntAPPRIS P4 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 HEPACAM2-203ENST00000440868 2060 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 EXOC7P1-201ENST00000509881 2059 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 IARS2P1-201ENST00000508226 3173 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 RAD9B-207ENST00000409778 1373 ntTSL 2 BASIC7.05□□□□□ -1.28
COL8A1P27658 FAM19A1-203ENST00000496687 1917 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 AC017007.4-201ENST00000503353 1352 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 DDX43P1-201ENST00000510713 1763 ntBASIC7.05□□□□□ -1.28
COL8A1P27658 SLC24A2-201ENST00000286344 2170 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 AC093117.1-201ENST00000413541 2171 ntTSL 2 BASIC7.05□□□□□ -1.28
COL8A1P27658 LINC00467-201ENST00000423222 3508 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 CBWD6-203ENST00000456520 1608 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 SMARCA1-203ENST00000371123 3948 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL8A1P27658 SSR1-210ENST00000489567 1893 ntTSL 3 BASIC7.04□□□□□ -1.28
COL8A1P27658 AC004491.1-201ENST00000623029 1882 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 ZNF143-204ENST00000396604 2696 ntAPPRIS ALT1 TSL 5 BASIC7.04□□□□□ -1.28
COL8A1P27658 GUCY1A3-202ENST00000393832 4286 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 AC099753.1-201ENST00000634947 2118 ntTSL 5 BASIC7.04□□□□□ -1.28
COL8A1P27658 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC7.04□□□□□ -1.28
COL8A1P27658 OR9M1P-202ENST00000641564 3163 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 NCKAP5-204ENST00000409213 2390 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
COL8A1P27658 SWT1-202ENST00000367501 3001 ntAPPRIS P1 TSL 2 BASIC7.04□□□□□ -1.28
COL8A1P27658 CALCOCO2-201ENST00000258947 3682 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 ZNF215-202ENST00000414517 3257 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
COL8A1P27658 AL354993.1-201ENST00000436286 3280 ntTSL 4 BASIC7.04□□□□□ -1.28
COL8A1P27658 PUS3-201ENST00000227474 1843 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 RSPO2-203ENST00000517939 2487 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 TRIM49-202ENST00000532501 1437 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
COL8A1P27658 SNX20-203ENST00000423026 2156 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 OR4K15-201ENST00000305051 1216 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 SNORD56.2-201ENST00000363242 71 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 IGBP1-AS1-201ENST00000366397 542 ntTSL 5 BASIC7.04□□□□□ -1.28
COL8A1P27658 NUPR1-202ENST00000395641 550 ntTSL 2 BASIC7.04□□□□□ -1.28
COL8A1P27658 RN7SKP279-201ENST00000411383 298 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 AC096570.1-201ENST00000419013 569 ntTSL 4 BASIC7.04□□□□□ -1.28
COL8A1P27658 ZBTB8OSP2-201ENST00000423890 504 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC7.04□□□□□ -1.28
COL8A1P27658 AC002069.1-201ENST00000429649 1159 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL8A1P27658 AL592114.2-201ENST00000440142 532 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC7.04□□□□□ -1.28
COL8A1P27658 RPL23AP76-201ENST00000441860 458 ntBASIC7.04□□□□□ -1.28
COL8A1P27658 BRK1P2-201ENST00000442875 223 ntBASIC7.04□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms