Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL3A1P02461 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL3A1P02461 KARSP1-201ENST00000451871 1752 ntBASIC7.79□□□□□ -1.16
COL3A1P02461 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL3A1P02461 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL3A1P02461 AC016251.2-201ENST00000623393 3089 ntBASIC7.78□□□□□ -1.16
COL3A1P02461 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC7.78□□□□□ -1.16
COL3A1P02461 NEPNP-201ENST00000404786 1371 ntBASIC7.78□□□□□ -1.16
COL3A1P02461 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC7.78□□□□□ -1.16
COL3A1P02461 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 MUC3A-203ENST00000483366 9944 ntAPPRIS ALT2 TSL 5 BASIC7.78□□□□□ -1.16
COL3A1P02461 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 TMSB4XP4-201ENST00000323496 618 ntBASIC7.78□□□□□ -1.16
COL3A1P02461 RNA5SP394-201ENST00000364216 119 ntBASIC7.78□□□□□ -1.16
COL3A1P02461 RNA5SP30-201ENST00000365552 115 ntBASIC7.78□□□□□ -1.16
COL3A1P02461 MIR130A-201ENST00000385274 89 ntBASIC7.78□□□□□ -1.16
COL3A1P02461 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC7.78□□□□□ -1.16
COL3A1P02461 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC7.78□□□□□ -1.16
COL3A1P02461 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC7.78□□□□□ -1.16
COL3A1P02461 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC7.78□□□□□ -1.16
COL3A1P02461 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 AL603882.1-201ENST00000463059 681 ntBASIC7.78□□□□□ -1.16
COL3A1P02461 PFN1P6-201ENST00000476786 399 ntBASIC7.78□□□□□ -1.16
COL3A1P02461 RNA5SP362-201ENST00000516048 118 ntBASIC7.78□□□□□ -1.16
COL3A1P02461 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC7.78□□□□□ -1.16
COL3A1P02461 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC7.78□□□□□ -1.16
COL3A1P02461 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC7.78□□□□□ -1.16
COL3A1P02461 AP000240.1-201ENST00000609910 452 ntBASIC7.78□□□□□ -1.16
COL3A1P02461 AL445670.1-201ENST00000618889 801 ntBASIC7.78□□□□□ -1.16
COL3A1P02461 MVP-219ENST00000629059 120 ntTSL 5 BASIC7.78□□□□□ -1.16
COL3A1P02461 AC008691.1-209ENST00000642094 814 ntBASIC7.78□□□□□ -1.16
COL3A1P02461 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC7.78□□□□□ -1.16
COL3A1P02461 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC7.78□□□□□ -1.16
COL3A1P02461 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC7.78□□□□□ -1.16
COL3A1P02461 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC7.78□□□□□ -1.16
COL3A1P02461 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC7.78□□□□□ -1.16
COL3A1P02461 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
COL3A1P02461 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
COL3A1P02461 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC7.78□□□□□ -1.16
COL3A1P02461 AL359195.2-201ENST00000623657 4412 ntBASIC7.78□□□□□ -1.16
COL3A1P02461 AC005725.1-201ENST00000577346 2607 ntBASIC7.78□□□□□ -1.16
COL3A1P02461 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL3A1P02461 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC7.77□□□□□ -1.16
COL3A1P02461 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.16
COL3A1P02461 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL3A1P02461 AC005225.5-201ENST00000623547 2225 ntBASIC7.77□□□□□ -1.17
COL3A1P02461 AL159987.1-201ENST00000347911 293 ntBASIC7.77□□□□□ -1.17
COL3A1P02461 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL3A1P02461 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC7.77□□□□□ -1.17
COL3A1P02461 AC016769.2-201ENST00000414815 475 ntBASIC7.77□□□□□ -1.17
COL3A1P02461 BMS1P17-202ENST00000416720 316 ntBASIC7.77□□□□□ -1.17
COL3A1P02461 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC7.77□□□□□ -1.17
COL3A1P02461 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC7.77□□□□□ -1.17
COL3A1P02461 AC006539.1-201ENST00000481419 501 ntBASIC7.77□□□□□ -1.17
COL3A1P02461 PPIAP19-201ENST00000486414 492 ntBASIC7.77□□□□□ -1.17
COL3A1P02461 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC7.77□□□□□ -1.17
COL3A1P02461 AC079600.1-201ENST00000550326 297 ntBASIC7.77□□□□□ -1.17
COL3A1P02461 AC126615.2-201ENST00000553003 515 ntBASIC7.77□□□□□ -1.17
COL3A1P02461 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC7.77□□□□□ -1.17
COL3A1P02461 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL3A1P02461 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC7.77□□□□□ -1.17
COL3A1P02461 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC7.77□□□□□ -1.17
COL3A1P02461 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL3A1P02461 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL3A1P02461 ZNF101P1-201ENST00000435701 1720 ntBASIC7.77□□□□□ -1.17
COL3A1P02461 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC7.77□□□□□ -1.17
COL3A1P02461 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC7.77□□□□□ -1.17
COL3A1P02461 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL3A1P02461 KAT7-201ENST00000259021 9644 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL3A1P02461 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL3A1P02461 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC7.77□□□□□ -1.17
COL3A1P02461 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL3A1P02461 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC7.77□□□□□ -1.17
COL3A1P02461 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL3A1P02461 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL3A1P02461 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL3A1P02461 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL3A1P02461 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL3A1P02461 AL121977.1-201ENST00000401636 979 ntBASIC7.76□□□□□ -1.17
COL3A1P02461 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC7.76□□□□□ -1.17
COL3A1P02461 SEC63P1-201ENST00000425785 1258 ntBASIC7.76□□□□□ -1.17
COL3A1P02461 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC7.76□□□□□ -1.17
COL3A1P02461 AC096775.1-201ENST00000437724 448 ntBASIC7.76□□□□□ -1.17
COL3A1P02461 AL161636.2-201ENST00000445179 927 ntBASIC7.76□□□□□ -1.17
COL3A1P02461 FRG2FP-204ENST00000453982 852 ntBASIC7.76□□□□□ -1.17
COL3A1P02461 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC7.76□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms