Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 AC027279.4-201ENST00000624371 2072 ntBASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 AC005225.5-201ENST00000623547 2225 ntBASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 RNA5SP346-201ENST00000363541 121 ntBASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 AP003170.5-201ENST00000397185 335 ntBASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 LYPLA1P3-201ENST00000402650 695 ntBASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 RN7SL714P-201ENST00000487050 298 ntBASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 AC025458.1-201ENST00000506046 166 ntBASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 AC138409.2-202ENST00000507274 458 ntBASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 IGHV3-57-201ENST00000520143 280 ntBASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 IGLV3-6-201ENST00000523937 250 ntBASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 OR4A6P-201ENST00000534364 970 ntBASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 WDR61-205ENST00000558459 884 ntTSL 3 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 AC012146.2-201ENST00000576545 416 ntBASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 AC012653.2-201ENST00000621880 420 ntBASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 MTCO1P28-201ENST00000574177 1528 ntBASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
TM9SF3Q9HD45 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 AL442128.2-201ENST00000620246 1824 ntBASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 AC023490.2-201ENST00000359859 470 ntBASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 RNA5SP110-201ENST00000362638 115 ntBASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 MIR130B-202ENST00000385018 82 ntBASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 AL359976.1-201ENST00000418655 3528 ntBASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 AL139415.1-201ENST00000424862 352 ntBASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 ATP5LP2-201ENST00000440646 311 ntBASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 AC098847.1-201ENST00000473094 348 ntBASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 SUMO2P4-201ENST00000504193 276 ntBASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 LINC00556-201ENST00000569603 412 ntBASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 MIR3614-201ENST00000581261 86 ntBASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 AC090616.1-201ENST00000583895 447 ntBASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 AC008521.2-201ENST00000591021 259 ntBASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 AC005332.4-201ENST00000592752 579 ntBASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 FO681491.1-202ENST00000623392 737 ntBASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 ZNF402P-201ENST00000404435 3100 ntBASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
TM9SF3Q9HD45 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
TM9SF3Q9HD45 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
TM9SF3Q9HD45 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms