Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC6.38□□□□□ -1.39
COL4A4P53420 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC6.38□□□□□ -1.39
COL4A4P53420 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC6.38□□□□□ -1.39
COL4A4P53420 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC6.38□□□□□ -1.39
COL4A4P53420 AL139407.1-201ENST00000613826 1175 ntBASIC6.38□□□□□ -1.39
COL4A4P53420 AC007204.2-201ENST00000615022 616 ntBASIC6.38□□□□□ -1.39
COL4A4P53420 AL355974.3-201ENST00000617383 467 ntBASIC6.38□□□□□ -1.39
COL4A4P53420 AC136428.4-201ENST00000634254 1155 ntBASIC6.38□□□□□ -1.39
COL4A4P53420 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A4P53420 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
COL4A4P53420 AC060780.1-202ENST00000590740 5084 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A4P53420 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
COL4A4P53420 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
COL4A4P53420 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A4P53420 LINC02250-201ENST00000422117 2491 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A4P53420 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A4P53420 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.38□□□□□ -1.39
COL4A4P53420 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC6.37□□□□□ -1.39
COL4A4P53420 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A4P53420 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
COL4A4P53420 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
COL4A4P53420 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC6.37□□□□□ -1.39
COL4A4P53420 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A4P53420 DOCK8-205ENST00000453981 7237 ntTSL 5 BASIC6.37□□□□□ -1.39
COL4A4P53420 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC6.37□□□□□ -1.39
COL4A4P53420 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A4P53420 AC016583.1-201ENST00000624221 2431 ntBASIC6.37□□□□□ -1.39
COL4A4P53420 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A4P53420 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A4P53420 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
COL4A4P53420 FABP12P1-201ENST00000401911 322 ntBASIC6.37□□□□□ -1.39
COL4A4P53420 AC016739.1-201ENST00000405359 345 ntBASIC6.37□□□□□ -1.39
COL4A4P53420 RN7SKP125-201ENST00000410481 302 ntBASIC6.37□□□□□ -1.39
COL4A4P53420 AL096829.1-201ENST00000413677 457 ntBASIC6.37□□□□□ -1.39
COL4A4P53420 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC6.37□□□□□ -1.39
COL4A4P53420 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC6.37□□□□□ -1.39
COL4A4P53420 ELOCP3-201ENST00000439303 348 ntBASIC6.37□□□□□ -1.39
COL4A4P53420 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A4P53420 AC104164.1-201ENST00000460282 590 ntBASIC6.37□□□□□ -1.39
COL4A4P53420 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC6.37□□□□□ -1.39
COL4A4P53420 AC110056.1-201ENST00000525759 911 ntBASIC6.37□□□□□ -1.39
COL4A4P53420 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.37□□□□□ -1.39
COL4A4P53420 LDHC-205ENST00000537486 583 ntTSL 5 BASIC6.37□□□□□ -1.39
COL4A4P53420 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC6.37□□□□□ -1.39
COL4A4P53420 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC6.37□□□□□ -1.39
COL4A4P53420 AC008115.4-201ENST00000619780 775 ntBASIC6.37□□□□□ -1.39
COL4A4P53420 MIR8080-201ENST00000622224 89 ntBASIC6.37□□□□□ -1.39
COL4A4P53420 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A4P53420 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC6.37□□□□□ -1.39
COL4A4P53420 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC6.37□□□□□ -1.39
COL4A4P53420 ASPM-203ENST00000367409 10887 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A4P53420 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A4P53420 ING3-204ENST00000431467 1447 ntTSL 2 BASIC6.37□□□□□ -1.39
COL4A4P53420 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A4P53420 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
COL4A4P53420 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A4P53420 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A4P53420 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A4P53420 NIPBL-201ENST00000282516 10435 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A4P53420 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC6.36□□□□□ -1.39
COL4A4P53420 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
COL4A4P53420 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A4P53420 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A4P53420 UTY-214ENST00000617789 6682 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A4P53420 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC6.36□□□□□ -1.39
COL4A4P53420 RNA5SP183-201ENST00000362452 119 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
COL4A4P53420 AL645927.1-201ENST00000396783 406 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC6.36□□□□□ -1.39
COL4A4P53420 RPS15AP30-201ENST00000420976 390 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 AC092017.2-201ENST00000427600 362 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 SPRYD7P1-201ENST00000443861 570 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 RPL35AP28-201ENST00000459730 331 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 AC114728.1-201ENST00000488289 483 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 AC008629.2-201ENST00000503783 483 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
COL4A4P53420 CYP4F27P-201ENST00000514557 494 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 OR7E158P-201ENST00000524483 910 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC6.36□□□□□ -1.39
COL4A4P53420 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC6.36□□□□□ -1.39
COL4A4P53420 AL137246.2-201ENST00000613439 662 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC6.36□□□□□ -1.39
COL4A4P53420 AL034408.1-201ENST00000637712 664 ntBASIC6.36□□□□□ -1.39
COL4A4P53420 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC6.36□□□□□ -1.39
COL4A4P53420 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC6.36□□□□□ -1.39
COL4A4P53420 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
COL4A4P53420 EPHA1-AS1-202ENST00000429289 5018 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A4P53420 CNTN4-202ENST00000397461 5198 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
COL4A4P53420 KIAA1217-204ENST00000376454 7381 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A4P53420 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A4P53420 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A4P53420 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC6.36□□□□□ -1.39
COL4A4P53420 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A4P53420 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.36□□□□□ -1.39
COL4A4P53420 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A4P53420 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A4P53420 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A4P53420 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC6.36□□□□□ -1.39
COL4A4P53420 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC6.36□□□□□ -1.39
COL4A4P53420 SNORA70H-201ENST00000383910 135 ntBASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms