Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AL050335.1-201ENST00000396909 869 ntBASIC11.64□□□□□ -0.55
SHROOM4Q9ULL8 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC11.64□□□□□ -0.55
SHROOM4Q9ULL8 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC11.64□□□□□ -0.55
SHROOM4Q9ULL8 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC11.64□□□□□ -0.55
SHROOM4Q9ULL8 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC11.64□□□□□ -0.55
SHROOM4Q9ULL8 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC11.64□□□□□ -0.55
SHROOM4Q9ULL8 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC11.64□□□□□ -0.55
SHROOM4Q9ULL8 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
SHROOM4Q9ULL8 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
SHROOM4Q9ULL8 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
SHROOM4Q9ULL8 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
SHROOM4Q9ULL8 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC11.64□□□□□ -0.55
SHROOM4Q9ULL8 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 AL596448.1-201ENST00000415024 392 ntBASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 AL512593.1-201ENST00000444758 779 ntBASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 MORF4L1P4-201ENST00000450245 976 ntBASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 EIF3LP3-201ENST00000495197 822 ntBASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 AC139493.1-201ENST00000604368 397 ntBASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 MIR6748-201ENST00000610433 71 ntBASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 ZC3H6-202ENST00000409871 11542 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 RNA5SP514-201ENST00000363717 111 ntBASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 MIR585-201ENST00000384887 94 ntBASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 SPRYD7P1-201ENST00000443861 570 ntBASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 AC138866.2-201ENST00000508650 584 ntBASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 AC073916.1-201ENST00000545095 130 ntBASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 AL356801.1-201ENST00000559320 294 ntBASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 AC097467.4-201ENST00000605504 141 ntBASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 AC006213.6-201ENST00000623722 4179 ntBASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 AC092724.1-201ENST00000624623 3397 ntBASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 PABPC1P6-201ENST00000445594 1829 ntBASIC11.63□□□□□ -0.55
SHROOM4Q9ULL8 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 AC011416.1-201ENST00000514947 1732 ntBASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 AC011815.2-201ENST00000618230 2021 ntBASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 AC025809.2-201ENST00000625085 1802 ntBASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 FMO7P-201ENST00000436045 768 ntBASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 MORF4-201ENST00000447135 971 ntBASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 AL133445.1-201ENST00000467051 452 ntBASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 AC093763.2-201ENST00000505334 1223 ntBASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 MIR3189-201ENST00000578735 73 ntBASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 MTND5P12-201ENST00000502851 1449 ntBASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
SHROOM4Q9ULL8 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 SETDB1-205ENST00000368969 4370 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 RNU1-24P-201ENST00000364285 165 ntBASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 RNA5SP156-201ENST00000410250 110 ntBASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC11.61□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 135 ms