Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC005702.3-201ENST00000585345 1447 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC022613.3-201ENST00000560740 1346 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 RNU6-925P-201ENST00000384629 104 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 XIST-201ENST00000416330 750 ntTSL 2 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 Z68868.1-201ENST00000429048 544 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 H3F3AP3-201ENST00000497682 407 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC093664.1-201ENST00000511779 289 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 IGHV3-57-201ENST00000520143 280 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 MIR4301-201ENST00000577203 66 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 RN7SL753P-201ENST00000581238 290 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC068313.1-201ENST00000604028 1008 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC135803.1-201ENST00000608748 565 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 IGKV2OR2-10-201ENST00000613976 311 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC109809.1-201ENST00000619665 545 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC022960.3-201ENST00000619794 441 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AC010872.1-201ENST00000624225 675 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AP001153.1-201ENST00000641024 338 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 AL137058.3-201ENST00000624531 3099 ntBASIC6.6□□□□□ -1.35
DKK3Q9UBP4 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
DKK3Q9UBP4 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 RNU1-84P-201ENST00000365447 164 ntBASIC6.59□□□□□ -1.35
DKK3Q9UBP4 RNA5SP122-201ENST00000384457 108 ntBASIC6.59□□□□□ -1.35
DKK3Q9UBP4 UBE2V1P15-201ENST00000407776 448 ntBASIC6.59□□□□□ -1.35
DKK3Q9UBP4 RN7SKP129-201ENST00000410288 299 ntBASIC6.59□□□□□ -1.35
DKK3Q9UBP4 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 AL360013.1-201ENST00000419031 858 ntBASIC6.59□□□□□ -1.35
DKK3Q9UBP4 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 RPL7AP51-201ENST00000422016 760 ntBASIC6.59□□□□□ -1.35
DKK3Q9UBP4 CYCSP52-201ENST00000422857 310 ntBASIC6.59□□□□□ -1.35
DKK3Q9UBP4 NDUFA5P1-201ENST00000433858 341 ntBASIC6.59□□□□□ -1.35
DKK3Q9UBP4 AC234771.2-201ENST00000445718 597 ntBASIC6.59□□□□□ -1.35
DKK3Q9UBP4 AL139156.3-201ENST00000454802 394 ntBASIC6.59□□□□□ -1.35
DKK3Q9UBP4 AC093827.1-201ENST00000480094 861 ntBASIC6.59□□□□□ -1.35
DKK3Q9UBP4 RPL5P14-201ENST00000494197 878 ntBASIC6.59□□□□□ -1.35
DKK3Q9UBP4 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 HMGN1P15-201ENST00000513870 295 ntBASIC6.59□□□□□ -1.35
DKK3Q9UBP4 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
DKK3Q9UBP4 AP003033.2-201ENST00000528901 805 ntBASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms