Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 NPM1P22-201ENST00000427761 952 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 RPL7P4-203ENST00000430239 730 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AL512882.1-201ENST00000436086 832 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 LYSMD1-202ENST00000440902 1003 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC018738.1-201ENST00000441378 210 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC107983.1-201ENST00000442562 210 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AL121908.1-201ENST00000443055 668 ntTSL 4 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 COX6CP12-201ENST00000446748 202 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 OR7E102P-201ENST00000448855 1015 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AL356311.1-201ENST00000451697 258 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 PRMT8-203ENST00000452611 1204 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AL133351.3-201ENST00000454998 193 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 PPIAP28-201ENST00000458378 485 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC010307.1-201ENST00000467206 836 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 TMEM150C-203ENST00000508701 566 ntTSL 4 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC010285.3-201ENST00000511668 676 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 TCP11X3P-202ENST00000514289 1254 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 RNU6-885P-201ENST00000516607 104 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 OR5G4P-201ENST00000525251 760 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 LINC02385-201ENST00000547554 428 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 SRMP2-201ENST00000553832 916 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 OR4F28P-201ENST00000559128 938 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC090751.1-201ENST00000566966 267 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC009117.3-201ENST00000568136 543 ntTSL 4 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AP005262.1-201ENST00000582646 997 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 OR4F8P-201ENST00000589943 937 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC025594.3-201ENST00000613068 790 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC005332.6-201ENST00000613178 446 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 U6atac.1-201ENST00000616025 117 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 MIR7844-201ENST00000616161 122 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 CNTNAP3P1-201ENST00000616657 906 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 Metazoa_SRP.27-201ENST00000617573 258 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC010320.5-201ENST00000619124 676 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC073534.2-201ENST00000620377 381 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC025048.6-202ENST00000627667 438 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC130464.1-201ENST00000416201 1500 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 NF1P7-201ENST00000612076 1530 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 BTN3A3-201ENST00000244519 3002 ntAPPRIS P4 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 RNF219-201ENST00000282003 3529 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 EPHA4-203ENST00000409938 3363 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 EVI2A-203ENST00000462804 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 NLGN4X-201ENST00000275857 5454 ntAPPRIS P2 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 SLC36A2-201ENST00000335244 3421 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 PIGN-225ENST00000638435 4382 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 EIF3EP1-201ENST00000433978 1316 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 CDC27P2-201ENST00000425026 1922 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 GUCY2F-201ENST00000218006 3714 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 RBM43-201ENST00000331426 4192 ntAPPRIS P2 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 MIR17HG-202ENST00000581816 2032 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 GTF2IP1-202ENST00000614592 2047 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 ALPK1-201ENST00000177648 4537 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 IFIT1P1-201ENST00000400497 1449 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 ZNF595-204ENST00000609518 2115 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC006058.1-201ENST00000568686 5067 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 IL18RAP-202ENST00000409369 1890 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC046144.1-201ENST00000478559 1853 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 ZNF674-207ENST00000523374 4073 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC116366.1-201ENST00000443093 3730 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 FBXL4-202ENST00000369244 8035 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AP003066.1-201ENST00000527528 1647 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 DEFA6-201ENST00000297436 469 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 RNA5SP463-201ENST00000363030 120 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 IGKV3-15-201ENST00000390252 442 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 TMSB4XP8-201ENST00000402089 135 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 STAG3L1-201ENST00000404291 496 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AL590290.1-201ENST00000405336 380 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AL451048.1-201ENST00000413328 217 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 TMSB4XP6-201ENST00000415187 135 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AL358942.1-201ENST00000418595 1178 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 TMSB4XP1-201ENST00000424567 135 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms