Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 AL591848.4-201ENST00000567832 3472 ntBASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 AC025470.1-201ENST00000510053 2032 ntBASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 HDAC1P2-201ENST00000453661 1398 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AK4P4-201ENST00000419465 646 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 RN7SL610P-201ENST00000463845 291 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AC074087.1-201ENST00000512059 724 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AL445649.1-201ENST00000615941 691 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AL357562.1-201ENST00000624911 609 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 SELE-203ENST00000367775 3389 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 TSHR-201ENST00000298171 4400 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 CDY5P-201ENST00000411487 1580 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 CDY9P-201ENST00000451397 1580 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AC011504.1-201ENST00000623331 4103 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 FTO-215ENST00000636491 1676 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 OFD1P17-201ENST00000437639 3018 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 RNA5SP350-201ENST00000363298 111 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 GAPDHP58-201ENST00000438477 1006 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 CYCSP51-201ENST00000443545 318 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AL122020.1-201ENST00000472287 459 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AC109481.1-201ENST00000509173 282 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 GAPDHP71-201ENST00000511530 1003 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 PCNAP4-201ENST00000532690 730 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AC092865.1-201ENST00000544395 1023 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 FO393422.1-201ENST00000603908 708 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AL049840.6-201ENST00000604583 345 ntBASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC88AQ3V6T2 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 ERRFI1-202ENST00000467067 2097 ntTSL 2 BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 RNA5SP394-201ENST00000364216 119 ntBASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 TPT1-204ENST00000379060 764 ntTSL 5 BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 AL662874.1-201ENST00000426065 230 ntBASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 CFL1P1-202ENST00000432948 411 ntBASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 AC012075.1-201ENST00000436549 580 ntBASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 DUTP7-201ENST00000507982 486 ntBASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 RNU6-615P-201ENST00000516065 106 ntBASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 RPSAP73-201ENST00000614820 330 ntBASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 AP001541.1-201ENST00000623322 1904 ntBASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC7.42□□□□□ -1.22
CCDC88AQ3V6T2 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AC005034.3-201ENST00000604845 1747 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AC005618.1-201ENST00000606901 3148 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AL589647.1-201ENST00000402485 466 ntBASIC7.41□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms