Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 BPHL-201ENST00000380368 797 ntTSL 5 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 MIR105-2-201ENST00000385083 81 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 RPL23AP18-201ENST00000416139 468 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 MTND2P12-201ENST00000417560 1252 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AC007394.1-201ENST00000421941 531 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 BTBD7P2-201ENST00000441962 620 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AL020997.1-201ENST00000446554 349 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 NDUFA5P8-201ENST00000449019 346 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 PPIAP27-201ENST00000453800 265 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 RN7SL187P-201ENST00000495587 303 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AC122713.1-201ENST00000518368 1015 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 FXNP1-201ENST00000555153 337 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 SNORA70D-201ENST00000578836 135 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 MIR1273E-201ENST00000581165 102 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 MIR3176-201ENST00000582210 90 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AC093227.1-201ENST00000588040 1360 ntTSL 3 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AC007159.1-201ENST00000566529 4706 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AL049634.1-201ENST00000453770 1720 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AL353763.1-201ENST00000624467 1628 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AC009779.8-201ENST00000641684 4384 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AC062029.1-202ENST00000606164 3651 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 AC139426.3-201ENST00000605648 2059 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 C1orf162-202ENST00000369718 915 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 AL359694.1-201ENST00000403247 604 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 OR2L9P-201ENST00000444456 913 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 MEF2AP1-201ENST00000454867 863 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 AC023194.2-201ENST00000465398 406 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 OR2A1-AS1-202ENST00000467944 422 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 GM2AP2-201ENST00000491764 562 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 SNX18P24-201ENST00000505249 671 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 AL390198.2-201ENST00000510553 222 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 LECT2-203ENST00000512872 762 ntTSL 5 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 AC021146.10-201ENST00000515628 706 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 OPCML-IT2-201ENST00000533260 398 ntTSL 4 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 RPL3P13-201ENST00000550415 216 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 AL591767.3-201ENST00000554632 525 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 AC067852.5-201ENST00000589299 310 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 AC092266.1-201ENST00000610958 165 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC6.24□□□□□ -1.41
COL28A1Q2UY09 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms