Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RPL5P25-201ENST00000441148 775 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC8.62□□□□□ -1.03
COL9A1P20849 AC135721.2-201ENST00000464237 300 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 MTND1P3-201ENST00000484956 952 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 KLHL2P1-201ENST00000508691 521 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 AC108120.2-201ENST00000512973 294 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 RNA5SP216-201ENST00000516111 123 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC8.62□□□□□ -1.03
COL9A1P20849 AP000879.2-201ENST00000530525 497 ntTSL 3 BASIC8.62□□□□□ -1.03
COL9A1P20849 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC8.62□□□□□ -1.03
COL9A1P20849 PRR13P4-201ENST00000577786 421 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 MIR3714-201ENST00000579507 65 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 AC125421.2-202ENST00000580776 477 ntTSL 3 BASIC8.62□□□□□ -1.03
COL9A1P20849 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC8.62□□□□□ -1.03
COL9A1P20849 BNIP3P4-201ENST00000604946 565 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 MIR6505-201ENST00000617206 71 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 ZRANB2-AS2-220ENST00000623721 1133 ntTSL 5 BASIC8.62□□□□□ -1.03
COL9A1P20849 HNRNPA1-204ENST00000547276 1539 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
COL9A1P20849 FBXL20-201ENST00000264658 10388 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
COL9A1P20849 CDRT1-203ENST00000395667 3016 ntAPPRIS ALT2 TSL 5 BASIC8.62□□□□□ -1.03
COL9A1P20849 C2orf49-201ENST00000258457 4768 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
COL9A1P20849 VPS8-207ENST00000436792 5011 ntAPPRIS ALT1 TSL 2 BASIC8.62□□□□□ -1.03
COL9A1P20849 ANO2-201ENST00000327087 3720 ntAPPRIS ALT2 TSL 5 BASIC8.62□□□□□ -1.03
COL9A1P20849 AC026887.1-201ENST00000624657 2985 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 FRMPD4-202ENST00000616992 7916 ntAPPRIS ALT2 TSL 5 BASIC8.62□□□□□ -1.03
COL9A1P20849 MAPK10-301ENST00000641313 2482 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 MTND5P33-201ENST00000571250 1450 ntBASIC8.62□□□□□ -1.03
COL9A1P20849 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC8.62□□□□□ -1.03
COL9A1P20849 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC8.62□□□□□ -1.03
COL9A1P20849 PDE11A-201ENST00000286063 9275 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
COL9A1P20849 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC8.62□□□□□ -1.03
COL9A1P20849 CYFIP2-209ENST00000521420 6370 ntTSL 2 BASIC8.62□□□□□ -1.03
COL9A1P20849 PRRC2B-203ENST00000405995 9157 ntTSL 5 BASIC8.62□□□□□ -1.03
COL9A1P20849 SOSTDC1-201ENST00000307068 1869 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
COL9A1P20849 CAP1-201ENST00000340450 2592 ntAPPRIS ALT1 TSL 5 BASIC8.62□□□□□ -1.03
COL9A1P20849 CTAGE9-201ENST00000314099 2334 ntAPPRIS P1 BASIC8.62□□□□□ -1.03
COL9A1P20849 TTC39A-212ENST00000447632 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
COL9A1P20849 RAB13-205ENST00000614713 1353 ntTSL 5 BASIC8.61□□□□□ -1.03
COL9A1P20849 AGAP1-207ENST00000428334 10090 ntTSL 5 BASIC8.61□□□□□ -1.03
COL9A1P20849 SYNJ1-201ENST00000357345 7059 ntAPPRIS ALT2 TSL 5 BASIC8.61□□□□□ -1.03
COL9A1P20849 SYNJ1-203ENST00000382499 7094 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
COL9A1P20849 EIF3H-201ENST00000276682 2041 ntTSL 2 BASIC8.61□□□□□ -1.03
COL9A1P20849 SEZ6L2-201ENST00000308713 3801 ntAPPRIS P4 TSL 1 (best) BASIC8.61□□□□□ -1.03
COL9A1P20849 IKZF2-202ENST00000374319 2001 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
COL9A1P20849 VPS13D-212ENST00000543766 3838 ntTSL 2 BASIC8.61□□□□□ -1.03
COL9A1P20849 LINC01660-204ENST00000619172 3572 ntTSL 5 BASIC8.61□□□□□ -1.03
COL9A1P20849 DDX11L16-201ENST00000507418 1306 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 MUSK-201ENST00000189978 2408 ntTSL 5 BASIC8.61□□□□□ -1.03
COL9A1P20849 MUSK-204ENST00000374440 2408 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
COL9A1P20849 ERVV-2-201ENST00000601417 2431 ntAPPRIS P1 TSL 4 BASIC8.61□□□□□ -1.03
COL9A1P20849 INPP5B-205ENST00000373027 3905 ntTSL 2 BASIC8.61□□□□□ -1.03
COL9A1P20849 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC8.61□□□□□ -1.03
COL9A1P20849 SERPINA10-201ENST00000261994 4978 ntAPPRIS P2 TSL 1 (best) BASIC8.61□□□□□ -1.03
COL9A1P20849 COL6A3-201ENST00000295550 10749 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
COL9A1P20849 NHSL2-208ENST00000639939 3402 ntTSL 5 BASIC8.61□□□□□ -1.03
COL9A1P20849 AC012464.3-201ENST00000604017 2773 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 OR5J1P-201ENST00000313544 939 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC8.61□□□□□ -1.03
COL9A1P20849 Y_RNA.188-201ENST00000363952 111 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 RNY4P34-201ENST00000364779 95 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 RN7SKP187-201ENST00000365536 330 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 C9orf92-202ENST00000380685 379 ntAPPRIS ALT2 TSL 2 BASIC8.61□□□□□ -1.03
COL9A1P20849 Y_RNA.445-201ENST00000384168 102 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 Y_RNA.476-201ENST00000384347 108 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 MIR568-201ENST00000385036 95 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 RNA5SP265-201ENST00000411023 111 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC8.61□□□□□ -1.03
COL9A1P20849 AC009237.9-201ENST00000414800 347 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 AC245054.2-201ENST00000415639 319 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 AC016716.2-201ENST00000418621 486 ntTSL 3 BASIC8.61□□□□□ -1.03
COL9A1P20849 MTCO2P27-201ENST00000420740 428 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 TEX41-204ENST00000423031 491 ntTSL 4 BASIC8.61□□□□□ -1.03
COL9A1P20849 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC8.61□□□□□ -1.03
COL9A1P20849 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC8.61□□□□□ -1.03
COL9A1P20849 AL590365.1-201ENST00000450788 243 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 AC091564.1-201ENST00000464563 479 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC8.61□□□□□ -1.03
COL9A1P20849 RN7SL201P-201ENST00000482306 296 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC8.61□□□□□ -1.03
COL9A1P20849 Y_RNA.691-201ENST00000516611 103 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC8.61□□□□□ -1.03
COL9A1P20849 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC8.61□□□□□ -1.03
COL9A1P20849 AC087241.2-201ENST00000535801 324 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC8.61□□□□□ -1.03
COL9A1P20849 AC009729.1-201ENST00000548873 1133 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 RPL21P5-201ENST00000554662 472 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 OTX2-204ENST00000554788 835 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
COL9A1P20849 AL117187.1-201ENST00000555482 181 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 FRG2IP-201ENST00000563581 781 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 TBC1D29-201ENST00000579181 652 ntAPPRIS P2 TSL 1 (best) BASIC8.61□□□□□ -1.03
COL9A1P20849 TBC1D29-204ENST00000584297 602 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
COL9A1P20849 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC8.61□□□□□ -1.03
COL9A1P20849 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC8.61□□□□□ -1.03
COL9A1P20849 AC011474.3-201ENST00000587520 250 ntTSL 5 BASIC8.61□□□□□ -1.03
COL9A1P20849 RPS4XP16-202ENST00000595905 807 ntTSL 5 BASIC8.61□□□□□ -1.03
COL9A1P20849 VDAC1P8-210ENST00000610068 1251 ntTSL 5 BASIC8.61□□□□□ -1.03
COL9A1P20849 AC068722.2-201ENST00000618734 544 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC8.61□□□□□ -1.03
COL9A1P20849 AC002401.3-201ENST00000620020 440 ntBASIC8.61□□□□□ -1.03
COL9A1P20849 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC8.61□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms