Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC007688.1-201ENST00000475592 759 ntBASIC7.83□□□□□ -1.16
COL3A1P02461 RN7SL101P-201ENST00000496350 279 ntBASIC7.83□□□□□ -1.16
COL3A1P02461 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC7.83□□□□□ -1.16
COL3A1P02461 AC006518.1-201ENST00000541449 943 ntBASIC7.83□□□□□ -1.16
COL3A1P02461 HSPE1P2-201ENST00000554777 306 ntBASIC7.83□□□□□ -1.16
COL3A1P02461 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC7.83□□□□□ -1.16
COL3A1P02461 RN7SL544P-201ENST00000617232 284 ntBASIC7.83□□□□□ -1.16
COL3A1P02461 RN7SL763P-201ENST00000620922 284 ntBASIC7.83□□□□□ -1.16
COL3A1P02461 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
COL3A1P02461 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC7.83□□□□□ -1.16
COL3A1P02461 ZNF445-202ENST00000425708 10052 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL3A1P02461 RPS2P45-201ENST00000469997 2057 ntBASIC7.83□□□□□ -1.16
COL3A1P02461 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
COL3A1P02461 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC7.83□□□□□ -1.16
COL3A1P02461 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL3A1P02461 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC7.83□□□□□ -1.16
COL3A1P02461 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC7.82□□□□□ -1.16
COL3A1P02461 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL3A1P02461 TLN2-209ENST00000561311 11880 ntAPPRIS P1 TSL 5 BASIC7.82□□□□□ -1.16
COL3A1P02461 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
COL3A1P02461 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL3A1P02461 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
COL3A1P02461 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
COL3A1P02461 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC7.82□□□□□ -1.16
COL3A1P02461 RNF19BPY-201ENST00000458209 1550 ntBASIC7.82□□□□□ -1.16
COL3A1P02461 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC7.82□□□□□ -1.16
COL3A1P02461 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL3A1P02461 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC7.82□□□□□ -1.16
COL3A1P02461 RN7SKP78-201ENST00000364711 318 ntBASIC7.82□□□□□ -1.16
COL3A1P02461 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL3A1P02461 AC087752.1-201ENST00000391360 558 ntBASIC7.82□□□□□ -1.16
COL3A1P02461 HIST1H3PS1-201ENST00000404612 417 ntBASIC7.82□□□□□ -1.16
COL3A1P02461 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC7.82□□□□□ -1.16
COL3A1P02461 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC7.82□□□□□ -1.16
COL3A1P02461 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC7.82□□□□□ -1.16
COL3A1P02461 HMGN1P36-201ENST00000446623 298 ntBASIC7.82□□□□□ -1.16
COL3A1P02461 ACA64.1-201ENST00000459171 127 ntBASIC7.82□□□□□ -1.16
COL3A1P02461 RN7SL352P-201ENST00000466002 277 ntBASIC7.82□□□□□ -1.16
COL3A1P02461 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC7.82□□□□□ -1.16
COL3A1P02461 AL355032.1-201ENST00000472981 438 ntBASIC7.82□□□□□ -1.16
COL3A1P02461 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC7.82□□□□□ -1.16
COL3A1P02461 RN7SL57P-201ENST00000493687 290 ntBASIC7.82□□□□□ -1.16
COL3A1P02461 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC7.82□□□□□ -1.16
COL3A1P02461 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC7.82□□□□□ -1.16
COL3A1P02461 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC7.82□□□□□ -1.16
COL3A1P02461 AC012146.2-201ENST00000576545 416 ntBASIC7.82□□□□□ -1.16
COL3A1P02461 AC145423.1-201ENST00000605712 336 ntBASIC7.82□□□□□ -1.16
COL3A1P02461 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC7.82□□□□□ -1.16
COL3A1P02461 NAA25-201ENST00000261745 6010 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL3A1P02461 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL3A1P02461 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
COL3A1P02461 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL3A1P02461 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL3A1P02461 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
COL3A1P02461 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC7.82□□□□□ -1.16
COL3A1P02461 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
COL3A1P02461 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL3A1P02461 AC123769.2-201ENST00000624332 5984 ntBASIC7.82□□□□□ -1.16
COL3A1P02461 AL161756.3-201ENST00000641216 2071 ntBASIC7.82□□□□□ -1.16
COL3A1P02461 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC7.82□□□□□ -1.16
COL3A1P02461 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL3A1P02461 AL161901.1-201ENST00000624954 3425 ntBASIC7.82□□□□□ -1.16
COL3A1P02461 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC7.82□□□□□ -1.16
COL3A1P02461 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL3A1P02461 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC7.81□□□□□ -1.16
COL3A1P02461 MIR375-201ENST00000362103 64 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 RNA5SP510-201ENST00000364697 99 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC7.81□□□□□ -1.16
COL3A1P02461 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC7.81□□□□□ -1.16
COL3A1P02461 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC7.81□□□□□ -1.16
COL3A1P02461 AL391987.1-201ENST00000441025 200 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC7.81□□□□□ -1.16
COL3A1P02461 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
COL3A1P02461 AL445665.1-202ENST00000452436 324 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC7.81□□□□□ -1.16
COL3A1P02461 AC073610.1-201ENST00000489971 396 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC7.81□□□□□ -1.16
COL3A1P02461 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC7.81□□□□□ -1.16
COL3A1P02461 GNG2-208ENST00000554875 430 ntTSL 5 BASIC7.81□□□□□ -1.16
COL3A1P02461 AC135626.1-201ENST00000556983 435 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC7.81□□□□□ -1.16
COL3A1P02461 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC7.81□□□□□ -1.16
COL3A1P02461 AL139099.4-201ENST00000614802 114 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 MIR6729-201ENST00000618194 65 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC7.81□□□□□ -1.16
COL3A1P02461 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC7.81□□□□□ -1.16
COL3A1P02461 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC7.81□□□□□ -1.16
COL3A1P02461 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL3A1P02461 AC068769.1-201ENST00000474767 2426 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL3A1P02461 LRRC37A16P-202ENST00000586022 3725 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL3A1P02461 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL3A1P02461 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC7.81□□□□□ -1.16
COL3A1P02461 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL3A1P02461 PARP4P2-201ENST00000446672 3326 ntBASIC7.81□□□□□ -1.16
COL3A1P02461 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC7.81□□□□□ -1.16
COL3A1P02461 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL3A1P02461 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC7.81□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms