Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CHMP1AQ9HD42 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC16.96■□□□□ 0.3
CHMP1AQ9HD42 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
CHMP1AQ9HD42 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 KRT19P1-201ENST00000405746 1186 ntBASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 RAB43-208ENST00000615093 783 ntTSL 5 BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CHMP1AQ9HD42 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 LBX2-AS1-202ENST00000603175 2083 ntBASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 MIR638-201ENST00000385237 100 ntBASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 PGM5P4-201ENST00000421970 445 ntBASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 SLC7A5P1-201ENST00000568957 537 ntBASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 OR6D1P-202ENST00000641007 5290 ntBASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 AC019069.1-201ENST00000610008 1333 ntBASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHMP1AQ9HD42 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 AC097381.1-201ENST00000429019 1296 ntBASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 CD44-222ENST00000526025 1052 ntTSL 2 BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 AC125437.2-201ENST00000625180 2167 ntBASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHMP1AQ9HD42 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms